Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   DQL30_RS07900 Genome accession   NZ_LS483333
Coordinates   1539824..1540303 (-) Length   159 a.a.
NCBI ID   WP_011285164.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534824..1545303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS07880 (NCTC12048_01567) - 1534993..1535598 (-) 606 WP_002982799.1 response regulator -
  DQL30_RS07885 (NCTC12048_01568) - 1535579..1537141 (-) 1563 WP_111713940.1 hypothetical protein -
  DQL30_RS07890 (NCTC12048_01569) - 1537181..1539088 (-) 1908 WP_023610628.1 FtsX-like permease family protein -
  DQL30_RS07895 (NCTC12048_01570) - 1539090..1539827 (-) 738 WP_009880388.1 ABC transporter ATP-binding protein -
  DQL30_RS07900 (NCTC12048_01571) comA/nlmT 1539824..1540303 (-) 480 WP_011285164.1 ABC transporter ATP-binding protein Regulator
  DQL30_RS07905 (NCTC12048_01572) - 1540359..1541984 (-) 1626 WP_111713941.1 DUF4135 domain-containing protein -
  DQL30_RS07910 (NCTC12048_01573) - 1542068..1542223 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  DQL30_RS07915 (NCTC12048_01574) lacG 1542714..1544120 (-) 1407 WP_063629613.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18490.13 Da        Isoelectric Point: 6.6371

>NTDB_id=1018012 DQL30_RS07900 WP_011285164.1 1539824..1540303(-) (comA/nlmT) [Streptococcus pyogenes strain NCTC12048]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1018012 DQL30_RS07900 WP_011285164.1 1539824..1540303(-) (comA/nlmT) [Streptococcus pyogenes strain NCTC12048]
ATGTTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCAGGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGATAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTTTAGCAAGAGAACTTGTAACCACCCCTAGAATCTTAGTTCTTGACGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATT
ATTTGTACAAAAATAATAAGGATTATTGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.94

93.711

0.384
  rcrQ Streptococcus mutans UA159

37.975

99.371

0.377
  comA Streptococcus mitis NCTC 12261

39.597

93.711

0.371
  comA Streptococcus pneumoniae D39

38.926

93.711

0.365
  comA Streptococcus pneumoniae R6

38.926

93.711

0.365
  comA Streptococcus mitis SK321

38.926

93.711

0.365
  comA Streptococcus pneumoniae Rx1

38.926

93.711

0.365
  comA Streptococcus pneumoniae TIGR4

38.926

93.711

0.365