Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DQL30_RS03885 Genome accession   NZ_LS483333
Coordinates   720394..721356 (+) Length   320 a.a.
NCBI ID   WP_111713732.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715394..726356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS03865 (NCTC12048_00761) - 716103..717323 (-) 1221 WP_111713731.1 DUF3114 domain-containing protein -
  DQL30_RS03870 (NCTC12048_00762) queA 717330..718358 (-) 1029 WP_023078839.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQL30_RS03875 (NCTC12048_00763) nagB 718560..719309 (+) 750 WP_038434150.1 glucosamine-6-phosphate deaminase -
  DQL30_RS03880 (NCTC12048_00764) - 719383..720099 (+) 717 WP_011528761.1 pseudouridine synthase -
  DQL30_RS03885 (NCTC12048_00765) coiA 720394..721356 (+) 963 WP_111713732.1 competence protein CoiA Machinery gene
  DQL30_RS03890 (NCTC12048_00766) pepF 721369..723174 (+) 1806 WP_111713733.1 oligoendopeptidase F Regulator
  DQL30_RS03895 (NCTC12048_00767) - 723551..724747 (+) 1197 WP_002995765.1 OFA family MFS transporter -
  DQL30_RS03900 (NCTC12048_00768) - 724813..725520 (+) 708 WP_032465077.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37829.30 Da        Isoelectric Point: 10.2848

>NTDB_id=1017983 DQL30_RS03885 WP_111713732.1 720394..721356(+) (coiA) [Streptococcus pyogenes strain NCTC12048]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKVYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1017983 DQL30_RS03885 WP_111713732.1 720394..721356(+) (coiA) [Streptococcus pyogenes strain NCTC12048]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTTTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGTCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCATAATATTATGGAAATGTTTCGGTTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAGAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTACAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403

Multiple sequence alignment