Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DQL30_RS02820 Genome accession   NZ_LS483333
Coordinates   528754..529419 (+) Length   221 a.a.
NCBI ID   WP_111713665.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12048     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523754..534419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL30_RS02795 (NCTC12048_00552) - 523905..525305 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQL30_RS02800 (NCTC12048_00553) - 525305..525682 (+) 378 WP_023610575.1 S1 RNA-binding domain-containing protein -
  DQL30_RS02805 (NCTC12048_00554) cysK 525700..526641 (-) 942 WP_011888673.1 cysteine synthase A -
  DQL30_RS02810 (NCTC12048_00555) - 526769..527401 (-) 633 WP_009880468.1 YigZ family protein -
  DQL30_RS02815 (NCTC12048_00556) comFA/cflA 527457..528782 (+) 1326 WP_111713664.1 DEAD/DEAH box helicase Machinery gene
  DQL30_RS02820 (NCTC12048_00557) comFC/cflB 528754..529419 (+) 666 WP_111713665.1 ComF family protein Machinery gene
  DQL30_RS02825 (NCTC12048_00558) hpf 529499..530047 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25133.39 Da        Isoelectric Point: 9.4626

>NTDB_id=1017974 DQL30_RS02820 WP_111713665.1 528754..529419(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC12048]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRGLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1017974 DQL30_RS02820 WP_111713665.1 528754..529419(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC12048]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAGGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412