Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQL25_RS09075 Genome accession   NZ_LS483330
Coordinates   1780637..1781233 (-) Length   198 a.a.
NCBI ID   WP_038434336.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8328     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775637..1786233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL25_RS09040 (NCTC8328_01797) - 1775696..1776001 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DQL25_RS09045 (NCTC8328_01798) ruvX 1776013..1776432 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DQL25_RS09050 (NCTC8328_01799) - 1776429..1776698 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DQL25_RS09055 (NCTC8328_01800) spx 1776813..1777211 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DQL25_RS09060 (NCTC8328_01801) recA 1777502..1778638 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  DQL25_RS09065 (NCTC8328_01802) cinA 1778727..1779998 (-) 1272 WP_032459984.1 competence/damage-inducible protein A Machinery gene
  DQL25_RS09070 (NCTC8328_01803) - 1780067..1780627 (-) 561 WP_111703697.1 DNA-3-methyladenine glycosylase I -
  DQL25_RS09075 (NCTC8328_01804) ruvA 1780637..1781233 (-) 597 WP_038434336.1 Holliday junction branch migration protein RuvA Machinery gene
  DQL25_RS09080 (NCTC8328_01805) - 1781235..1782455 (-) 1221 WP_111703699.1 MDR family MFS transporter -
  DQL25_RS09085 (NCTC8328_01806) hexB 1782466..1784448 (-) 1983 WP_111703701.1 DNA mismatch repair endonuclease MutL Machinery gene
  DQL25_RS09090 (NCTC8328_01807) - 1784543..1785688 (-) 1146 WP_111703703.1 tyrosine-type recombinase/integrase -
  DQL25_RS09840 - 1785943..1786086 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21834.16 Da        Isoelectric Point: 6.4948

>NTDB_id=1017726 DQL25_RS09075 WP_038434336.1 1780637..1781233(-) (ruvA) [Streptococcus pyogenes strain NCTC8328]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1017726 DQL25_RS09075 WP_038434336.1 1780637..1781233(-) (ruvA) [Streptococcus pyogenes strain NCTC8328]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCTATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414