Detailed information NTG1017689

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: ABX042_RS06255
• Genome accession: NZ_CP160076
• Coordinates: 1395821..1396999 (-)
• Length: 392 a.a.
• NCBI ID: WP_370578619.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel01
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1390821..1401999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX042_RS06235 (ABX042_12165)	-	1391918..1392172 (-)	255	WP_037392355.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ABX042_RS06240 (ABX042_12170)	rsmD	1392264..1392836 (-)	573	WP_279037229.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ABX042_RS06245 (ABX042_12175)	topA	1392915..1395209 (-)	2295	WP_279037226.1	type I DNA topoisomerase	-
ABX042_RS06250 (ABX042_12180)	-	1395351..1395809 (-)	459	WP_025329887.1	DUF494 family protein	-
ABX042_RS06255 (ABX042_12190)	dprA	1395821..1396999 (-)	1179	WP_370578619.1	DNA-processing protein DprA	Machinery gene
ABX042_RS06260 (ABX042_12200)	-	1397387..1398172 (+)	786	WP_370578620.1	DUF2071 domain-containing protein	-
ABX042_RS06265 (ABX042_12205)	ruvC	1398277..1398828 (-)	552	WP_279034300.1	crossover junction endodeoxyribonuclease RuvC	-
ABX042_RS06270 (ABX042_12210)	murU	1398959..1399660 (-)	702	WP_198210337.1	N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU	-
ABX042_RS06275 (ABX042_12215)	-	1399793..1401022 (-)	1230	WP_370579168.1	PilT/PilU family type 4a pilus ATPase	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 42159.16 Da
• Isoelectric Point: 6.4947

>NTDB_id=1017689 ABX042_RS06255 WP_370578619.1 1395821..1396999(-) (dprA) [Snodgrassella alvi strain Amel01]
MDTQERLAWIELALTPFVGAETFLRIIKYFGSAQNALSASAAEISPFCQRQVSKYWHSDVAKQATEAAIEWEQAHTDARL
LLLADNDFPAMLTKGLTPPPLLFVRGDSQCLHQPALSIVGSRHATPQAMRITRDFAAALAHKGVTIISGMASGADTAAHQ
GALQAMGTTVAVWGTGIDRVYPARNKNLATQIAAHGCIISEFPLATRPSPGNFPRRNRLIAALSQGTLVVEAATESGSLI
TARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLEDILQECPRLLQKKDLQSYSNRPHLQTDDISKSSTNTDS
SEDSLSVHSPDCILNPMEQQVLDGLGYGIMHPDMLVTALGMAATDVYAHLVTLELGGWITTLPGGCYQRIKS

Nucleotide

• Length: 1179 bp

>NTDB_id=1017689 ABX042_RS06255 WP_370578619.1 1395821..1396999(-) (dprA) [Snodgrassella alvi strain Amel01]
ATGGATACACAAGAACGCCTAGCCTGGATTGAATTGGCATTAACTCCGTTTGTGGGTGCTGAAACTTTTCTTCGCATAAT
TAAATATTTTGGTTCAGCACAAAATGCTCTTAGTGCATCGGCTGCTGAAATATCGCCTTTTTGTCAACGGCAAGTCAGTA
AGTATTGGCATAGTGATGTAGCAAAACAGGCAACTGAAGCAGCTATAGAATGGGAGCAAGCGCATACTGATGCACGTTTA
TTACTACTGGCAGATAATGATTTTCCGGCAATGCTGACCAAGGGTTTAACACCGCCTCCATTATTGTTTGTTCGTGGTGA
TAGCCAGTGTTTGCATCAACCCGCTTTATCAATTGTTGGCAGTCGGCATGCTACACCACAAGCCATGCGCATTACTCGTG
ATTTTGCTGCTGCGCTGGCTCACAAAGGTGTAACAATTATTTCAGGTATGGCTAGTGGCGCAGATACAGCAGCACATCAG
GGTGCTTTGCAGGCAATGGGTACAACAGTGGCAGTTTGGGGTACAGGTATTGACAGAGTATATCCGGCACGTAACAAAAA
TTTAGCCACACAAATTGCTGCTCATGGCTGTATTATTTCTGAATTTCCCTTGGCTACTCGTCCTTCGCCCGGAAATTTTC
CGCGACGTAACCGCTTGATTGCTGCACTTAGTCAGGGTACGCTGGTAGTTGAAGCTGCAACTGAATCGGGCTCATTGATT
ACTGCAAGATTGGCTGGCGAAATGGGGCGGGAAGTTATGGCGATACCGGGTTCTATTGATAACCCTTTAAGTAAAGGCTG
CCACGCATTAATCAAACAGGGTGCCAAATTAGTAGAAAATCTGGAAGATATTTTGCAGGAATGTCCACGCCTCTTGCAAA
AAAAAGATTTGCAATCATATAGCAATCGTCCTCATCTGCAAACTGATGATATAAGTAAATCATCTACAAATACTGATAGT
TCAGAAGATTCATTATCAGTTCATTCACCAGATTGTATACTTAACCCGATGGAGCAGCAGGTGCTGGACGGACTGGGTTA
CGGCATAATGCATCCGGATATGTTAGTTACAGCACTTGGCATGGCTGCTACAGATGTGTATGCTCATCTCGTGACATTGG
AGCTTGGTGGCTGGATTACCACTCTGCCAGGCGGCTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (334-385)

• DNA recombination-mediator protein A (DNA_processg_A) (76-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Neisseria meningitidis strain C311	58.04	100	0.589
dprA	Neisseria meningitidis MC58	58.04	100	0.589
dprA	Neisseria gonorrhoeae strain FA1090	56.543	100	0.584
dprA	Neisseria gonorrhoeae MS11	56.296	100	0.582