Detailed information NTG1017606

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABX025_RS00965
• Genome accession: NZ_CP160073
• Coordinates: 191406..191864 (+)
• Length: 152 a.a.
• NCBI ID: WP_084585929.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel09
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 186406..196864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX025_RS00930 (ABX025_05715)	-	186582..186947 (-)	366	Protein_184	TonB-dependent receptor domain-containing protein	-
ABX025_RS00935 (ABX025_05720)	-	187063..187485 (-)	423	WP_371752070.1	TonB-dependent receptor domain-containing protein	-
ABX025_RS00940 (ABX025_05725)	-	187518..187742 (-)	225	WP_370580384.1	hypothetical protein	-
ABX025_RS00945 (ABX025_05730)	-	187824..188738 (-)	915	WP_367484628.1	TonB-dependent receptor plug domain-containing protein	-
ABX025_RS00950 (ABX025_05735)	-	189110..189913 (+)	804	WP_198223416.1	hypothetical protein	-
ABX025_RS00955 (ABX025_05740)	-	190195..190644 (+)	450	WP_369433395.1	pilin	-
ABX025_RS00960 (ABX025_05745)	-	190795..191256 (+)	462	WP_369433396.1	pilin	-
ABX025_RS00965 (ABX025_05750)	pilA	191406..191864 (+)	459	WP_084585929.1	pilin	Machinery gene
ABX025_RS00970 (ABX025_05755)	-	192388..193377 (+)	990	WP_371752071.1	sulfatase-like hydrolase/transferase	-
ABX025_RS00975 (ABX025_05765)	waaA	193564..194853 (-)	1290	WP_084585927.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-

Sequence

Protein

• Length: 152 a.a.
• Molecular weight: 15643.00 Da
• Isoelectric Point: 9.6428

>NTDB_id=1017606 ABX025_RS00965 WP_084585929.1 191406..191864(+) (pilA) [Snodgrassella alvi strain Amel09]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNNNCKSGPNNTVDNAIDKQTG
KYGVAEIGGTAATGSISANGATGCTITYTVNGQKVSASIAGKTLILDVLKNGSLKKNGGTMPDKYVPKAFTI

Nucleotide

• Length: 459 bp

>NTDB_id=1017606 ABX025_RS00965 WP_084585929.1 191406..191864(+) (pilA) [Snodgrassella alvi strain Amel09]
ATGAAAGCATTCCAAAAAGGTTTTACTTTAATTGAATTGATGATTGTAATTGCAATTATCGGTATCCTTGCTGCAATTGC
CGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAAGCTTCCAGTCTGGCTGCTGGTCTGAAAACTCAGA
TTATTGATAACTTGCAGAATAATAATTGTAAGTCAGGTCCCAATAATACAGTTGATAACGCCATTGATAAGCAGACTGGT
AAATACGGTGTGGCAGAAATCGGTGGTACTGCCGCTACCGGCAGTATTTCTGCTAACGGTGCAACAGGCTGTACAATTAC
ATATACAGTAAACGGTCAAAAAGTATCTGCTTCTATTGCTGGTAAGACTTTGATATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATGGTGGGACTATGCCTGATAAATATGTACCTAAAGCATTCACAATCTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-149)

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Acinetobacter nosocomialis M2	53.741	96.711	0.52
pilA2	Legionella pneumophila strain ERS1305867	40.541	97.368	0.395
pilA	Pseudomonas aeruginosa PAK	39.474	100	0.395
pilA2	Legionella pneumophila str. Paris	40.136	96.711	0.388