Detailed information NTG1017579

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABX022_RS00110
• Genome accession: NZ_CP160072
• Coordinates: 31644..32102 (-)
• Length: 152 a.a.
• NCBI ID: WP_084585929.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel07
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 26644..37102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX022_RS00100 (ABX022_07915)	waaA	28655..29944 (+)	1290	WP_370580381.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
ABX022_RS00105 (ABX022_07905)	-	30131..31120 (-)	990	WP_370580383.1	sulfatase-like hydrolase/transferase	-
ABX022_RS00110 (ABX022_07900)	pilA	31644..32102 (-)	459	WP_084585929.1	pilin	Machinery gene
ABX022_RS00115 (ABX022_07895)	-	32252..32713 (-)	462	WP_369433396.1	pilin	-
ABX022_RS00120 (ABX022_07890)	-	32864..33313 (-)	450	WP_084585931.1	pilin	-
ABX022_RS00125 (ABX022_07885)	-	33595..34398 (-)	804	WP_198223416.1	hypothetical protein	-
ABX022_RS00130 (ABX022_07880)	-	34877..35686 (+)	810	WP_370520383.1	TonB-dependent receptor plug domain-containing protein	-
ABX022_RS00135 (ABX022_07875)	-	35768..35992 (+)	225	WP_370580384.1	hypothetical protein	-
ABX022_RS00140 (ABX022_07870)	-	36025..36447 (+)	423	WP_367481494.1	TonB-dependent receptor domain-containing protein	-
ABX022_RS00145 (ABX022_07865)	-	36419..36928 (+)	510	WP_367481492.1	TonB-dependent receptor domain-containing protein	-

Sequence

Protein

• Length: 152 a.a.
• Molecular weight: 15643.00 Da
• Isoelectric Point: 9.6428

>NTDB_id=1017579 ABX022_RS00110 WP_084585929.1 31644..32102(-) (pilA) [Snodgrassella alvi strain Amel07]
MKAFQKGFTLIELMIVIAIIGILAAIAVPAYSDYIARSQASEASSLAAGLKTQIIDNLQNNNCKSGPNNTVDNAIDKQTG
KYGVAEIGGTAATGSISANGATGCTITYTVNGQKVSASIAGKTLILDVLKNGSLKKNGGTMPDKYVPKAFTI

Nucleotide

• Length: 459 bp

>NTDB_id=1017579 ABX022_RS00110 WP_084585929.1 31644..32102(-) (pilA) [Snodgrassella alvi strain Amel07]
ATGAAAGCATTCCAAAAAGGTTTTACTTTAATTGAATTGATGATTGTAATTGCAATTATCGGTATCCTTGCTGCAATTGC
CGTACCTGCTTACTCTGATTATATTGCCCGTTCTCAGGCTTCAGAAGCTTCCAGTCTGGCTGCTGGTCTGAAAACTCAGA
TTATTGATAACTTGCAGAATAATAATTGTAAGTCAGGTCCCAATAATACAGTTGATAACGCCATTGATAAGCAGACTGGT
AAATACGGTGTGGCAGAAATCGGTGGTACTGCCGCTACCGGCAGTATTTCTGCTAACGGTGCAACAGGCTGTACAATTAC
ATATACAGTAAACGGTCAAAAAGTATCTGCTTCTATTGCTGGTAAGACTTTGATATTGGATGTATTAAAAAATGGTTCAC
TGAAGAAAAATGGTGGGACTATGCCTGATAAATATGTACCTAAAGCATTCACAATCTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-149)

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Acinetobacter nosocomialis M2	53.741	96.711	0.52
pilA2	Legionella pneumophila strain ERS1305867	40.541	97.368	0.395
pilA	Pseudomonas aeruginosa PAK	39.474	100	0.395
pilA2	Legionella pneumophila str. Paris	40.136	96.711	0.388