Detailed information NTG1017564

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: ABX016_RS03940
• Genome accession: NZ_CP160071
• Coordinates: 905997..907175 (+)
• Length: 392 a.a.
• NCBI ID: WP_367414812.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel06
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 900997..912175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX016_RS03920 (ABX016_00675)	-	901983..903212 (+)	1230	WP_084547989.1	PilT/PilU family type 4a pilus ATPase	-
ABX016_RS03925 (ABX016_00670)	murU	903344..904045 (+)	702	WP_367414815.1	N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU	-
ABX016_RS03930 (ABX016_00665)	ruvC	904176..904727 (+)	552	WP_100115591.1	crossover junction endodeoxyribonuclease RuvC	-
ABX016_RS03935 (ABX016_00660)	-	904825..905610 (-)	786	WP_367414813.1	DUF2071 domain-containing protein	-
ABX016_RS03940 (ABX016_00655)	dprA	905997..907175 (+)	1179	WP_367414812.1	DNA-processing protein DprA	Machinery gene
ABX016_RS03945 (ABX016_00650)	-	907187..907645 (+)	459	WP_025329887.1	DUF494 family protein	-
ABX016_RS03950 (ABX016_00645)	topA	907787..910081 (+)	2295	WP_084586036.1	type I DNA topoisomerase	-
ABX016_RS03955 (ABX016_00640)	rsmD	910160..910732 (+)	573	WP_025329889.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ABX016_RS03960 (ABX016_00635)	-	910824..911078 (+)	255	WP_025329890.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 42172.20 Da
• Isoelectric Point: 6.7654

>NTDB_id=1017564 ABX016_RS03940 WP_367414812.1 905997..907175(+) (dprA) [Snodgrassella alvi strain Amel06]
MDTQERLAWIELALTPFVGAETFLRIIKYFGSAQNALSASAAEISPFCQRQVSKYWHSDVAKQATEAAIEWERAHTDARL
LLLADNDFPAMLTKGLTPPPLLFVRGDSQCLHQPALSIVGSRHATPQAMRITRDFAAALAHKGVTIISGMASGADTAAHQ
GALQAMGTTVAVWGTGIDRVYPARNKNLATQIAAHGCIISEFPLGTRPSPGNFPRRNRLIAALSQGTLVVEAATESGSLI
TARLAGEMGREVMAIPGSIDNPLSKGCHALIKQGAKLVENLEDILQECPRLLQKKDLQSYSNRPHLQTDDISKSSTNTDS
SEDSLSVHSPNCILNPMEQQVLDGLGYGIMHPDMLVTALGMAATDVYAHLVTLELGGWITTLPGGCYQRIKS

Nucleotide

• Length: 1179 bp

>NTDB_id=1017564 ABX016_RS03940 WP_367414812.1 905997..907175(+) (dprA) [Snodgrassella alvi strain Amel06]
ATGGATACACAAGAACGCCTTGCCTGGATTGAATTGGCATTGACTCCGTTTGTTGGTGCTGAAACTTTTCTTCGTATAAT
TAAATATTTTGGTTCTGCACAAAATGCTCTTAGTGCATCGGCTGCTGAAATATCGCCTTTTTGCCAACGGCAAGTCAGTA
AGTATTGGCATAGTGATGTAGCAAAACAGGCAACTGAAGCAGCTATAGAATGGGAGCGAGCGCATACTGATGCACGTTTA
TTACTACTGGCAGATAATGATTTTCCGGCAATGCTAACCAAGGGTTTAACACCGCCTCCATTATTGTTTGTTCGTGGTGA
TAGCCAGTGTTTGCATCAACCCGCTTTATCAATTGTTGGCAGTCGGCATGCTACACCACAAGCCATGCGCATTACTCGTG
ATTTTGCTGCTGCGCTGGCTCACAAAGGTGTAACAATTATTTCAGGTATGGCTAGTGGCGCAGATACAGCAGCACATCAG
GGTGCTTTGCAGGCAATGGGTACAACAGTGGCAGTTTGGGGTACAGGTATTGACAGAGTATATCCGGCACGTAACAAAAA
TTTAGCCACACAAATTGCTGCTCATGGCTGTATTATTTCTGAATTTCCTTTAGGTACTCGTCCTTCTCCAGGAAATTTTC
CGCGACGTAACCGCTTGATTGCTGCACTTAGTCAGGGTACGCTGGTAGTTGAAGCCGCAACTGAATCGGGCTCATTGATT
ACTGCAAGACTGGCCGGAGAAATGGGGCGGGAAGTTATGGCGATACCGGGTTCTATTGATAACCCTTTAAGTAAAGGCTG
CCACGCATTAATCAAACAGGGTGCCAAATTAGTAGAAAATCTGGAAGATATTTTGCAGGAATGTCCACGCCTCTTGCAAA
AAAAAGATTTGCAATCATATAGCAATCGTCCTCATCTGCAAACTGATGATATAAGTAAATCATCTACAAATACTGATAGT
TCAGAAGATTCATTATCAGTTCATTCACCAAATTGTATACTTAACCCGATGGAGCAGCAGGTGCTGGACGGACTGGGTTA
CGGCATAATGCATCCGGATATGTTAGTTACAGCACTTGGCATGGCTGCTACAGATGTGTATGCTCATCTCGTGACATTGG
AGCTTGGTGGCTGGATTACCACTCTGCCAGGCGGTTGTTATCAACGCATTAAATCTTGA

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (334-385)

• DNA recombination-mediator protein A (DNA_processg_A) (76-279)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Neisseria meningitidis strain C311	58.291	100	0.592
dprA	Neisseria meningitidis MC58	58.291	100	0.592
dprA	Neisseria gonorrhoeae strain FA1090	56.79	100	0.587
dprA	Neisseria gonorrhoeae MS11	56.543	100	0.584