Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABX016_RS04840 Genome accession   NZ_CP160071
Coordinates   1116683..1117489 (-) Length   268 a.a.
NCBI ID   WP_279031877.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel06     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1111683..1122489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX016_RS04820 (ABX016_15335) - 1112709..1113107 (+) 399 WP_279039937.1 DUF350 domain-containing protein -
  ABX016_RS04825 (ABX016_15330) - 1113140..1114183 (+) 1044 WP_084548056.1 SPFH domain-containing protein -
  ABX016_RS04830 (ABX016_17140) - 1114192..1116030 (+) 1839 WP_084585859.1 DUF4178 domain-containing protein -
  ABX016_RS04835 (ABX016_15315) speD 1116018..1116395 (+) 378 WP_367414674.1 adenosylmethionine decarboxylase -
  ABX016_RS04840 (ABX016_15310) comL 1116683..1117489 (-) 807 WP_279031877.1 outer membrane protein assembly factor BamD Machinery gene
  ABX016_RS04845 (ABX016_15305) rluD 1117488..1118618 (+) 1131 WP_370581344.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABX016_RS04850 (ABX016_15300) pgeF 1118628..1119434 (+) 807 WP_370581345.1 peptidoglycan editing factor PgeF -
  ABX016_RS04855 (ABX016_15295) - 1119739..1120266 (+) 528 WP_078474806.1 DUF6882 domain-containing protein -
  ABX016_RS04860 (ABX016_17145) - 1120668..1121399 (+) 732 WP_037392580.1 beta-ketoacyl synthase chain length factor -
  ABX016_RS04865 (ABX016_15280) - 1121441..1122166 (+) 726 WP_232335809.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  ABX016_RS04870 (ABX016_15275) - 1122170..1122427 (+) 258 WP_037392583.1 phosphopantetheine-binding protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30976.93 Da        Isoelectric Point: 6.6496

>NTDB_id=1017566 ABX016_RS04840 WP_279031877.1 1116683..1117489(-) (comL) [Snodgrassella alvi strain Amel06]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQARFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVSKLAKQDWSDRDPKANREAYATFALLVQYFPQS
KYAEDARAKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQFQNTPNVEEALAIMVSAYANLGEQKLSDDTKRV
LAQNFPNSPYLQKPWQDHNTIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1017566 ABX016_RS04840 WP_279031877.1 1116683..1117489(-) (comL) [Snodgrassella alvi strain Amel06]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTGTTACTGAGTGCCTGTGCCAGCACAAGTACGGTAGATAAAGATTC
CCAGATTACCCAGGACTGGTCAGTTCAGCGTCTGTACAATGAAGCACATGATGAGCTGATGCACCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGGCACGTTTCCCTTACGGTTCTTATGCCGAACAGGCTCAGCTGGATACGGCTTAT
GCTTATTATAAGGATGATGAGAACGATAAGGCACTGGCTGCTATTGAACAGTTCCAGCGTCTTTATCCGCAACATCCGAA
TATGGATTATGCGCTATATTTGAAAGCGCTGATTCAGCTCAATGAAGACAAATCATTTGTCAGCAAACTGGCAAAACAGG
ACTGGTCTGACCGCGATCCTAAAGCAAACCGTGAAGCTTATGCTACTTTTGCTCTGCTCGTACAGTATTTTCCACAGAGC
AAATATGCTGAAGACGCCCGTGCCAAAATGCAGAAACTGCTGGATGCACTGGGTGGTAATGAACTCTCCGTGGCACGCTA
TTATATGAAGCGCGGTGCGTGGCTTGCTGCGGTAGGACGGGCACAGACTGTCATTTCTCAATTTCAGAATACGCCAAATG
TTGAAGAAGCTCTGGCAATCATGGTTTCAGCATATGCAAATCTGGGCGAGCAGAAACTCAGTGATGATACCAAACGTGTA
CTGGCACAAAATTTCCCGAACAGCCCGTATTTACAGAAACCATGGCAGGATCACAATACCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

67.041

99.627

0.668
  comL Neisseria gonorrhoeae MS11

66.667

99.627

0.664

Multiple sequence alignment