Detailed information NTG1017292

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABZM26_RS23100
• Genome accession: NZ_CP160044
• Coordinates: 5118751..5120097 (+)
• Length: 448 a.a.
• NCBI ID: WP_024014351.1
• Uniprot ID: V8R2K7
• Organism: Pseudomonas atacamensis strain GZ-3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5113751..5125097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZM26_RS23075	pgeF	5113965..5114687 (-)	723	WP_350482165.1	peptidoglycan editing factor PgeF	-
ABZM26_RS23080	rluD	5114684..5115646 (-)	963	WP_016773140.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ABZM26_RS23085	-	5115798..5116814 (+)	1017	WP_016773139.1	outer membrane protein assembly factor BamD	-
ABZM26_RS23090	-	5116942..5117175 (+)	234	WP_016773138.1	PP0621 family protein	-
ABZM26_RS23095	pilS	5117165..5118754 (+)	1590	WP_123443316.1	ATP-binding protein	Regulator
ABZM26_RS23100	pilR	5118751..5120097 (+)	1347	WP_024014351.1	sigma-54 dependent transcriptional regulator	Regulator
ABZM26_RS23105	thiO	5120190..5121290 (-)	1101	WP_123443315.1	glycine oxidase ThiO	-
ABZM26_RS23110	-	5121347..5121748 (-)	402	WP_122750953.1	type IV pilin protein	-
ABZM26_RS23115	-	5121764..5124853 (-)	3090	WP_366300583.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50162.46 Da
• Isoelectric Point: 6.3600

>NTDB_id=1017292 ABZM26_RS23100 WP_024014351.1 5118751..5120097(+) (pilR) [Pseudomonas atacamensis strain GZ-3]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=1017292 ABZM26_RS23100 WP_024014351.1 5118751..5120097(+) (pilR) [Pseudomonas atacamensis strain GZ-3]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCTATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTACGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGACTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAACCCTTTGTGCCGGTGAACTGCGGGGCGATTCCGTCAGAACTGATGGAAAGCGAGTTCTTCGGTCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCAGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTACGCATCCTTTGTGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGTGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTAGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTAAA
GAACTATCGCTTCCCCGGCAATGTGCGCGAACTGGAGAACGTCCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGTTATCGGCTGAAGAAATTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

3D structure

• AlphaFold DB: V8R2K7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	98.884	0.772
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507
luxO	Vibrio cholerae strain A1552	40.098	91.295	0.366