Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABZM26_RS23095 Genome accession   NZ_CP160044
Coordinates   5117165..5118754 (+) Length   529 a.a.
NCBI ID   WP_123443316.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain GZ-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5112165..5123754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM26_RS23075 pgeF 5113965..5114687 (-) 723 WP_350482165.1 peptidoglycan editing factor PgeF -
  ABZM26_RS23080 rluD 5114684..5115646 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABZM26_RS23085 - 5115798..5116814 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  ABZM26_RS23090 - 5116942..5117175 (+) 234 WP_016773138.1 PP0621 family protein -
  ABZM26_RS23095 pilS 5117165..5118754 (+) 1590 WP_123443316.1 ATP-binding protein Regulator
  ABZM26_RS23100 pilR 5118751..5120097 (+) 1347 WP_024014351.1 sigma-54 dependent transcriptional regulator Regulator
  ABZM26_RS23105 thiO 5120190..5121290 (-) 1101 WP_123443315.1 glycine oxidase ThiO -
  ABZM26_RS23110 - 5121347..5121748 (-) 402 WP_122750953.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58610.31 Da        Isoelectric Point: 6.8633

>NTDB_id=1017291 ABZM26_RS23095 WP_123443316.1 5117165..5118754(+) (pilS) [Pseudomonas atacamensis strain GZ-3]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSAEEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1017291 ABZM26_RS23095 WP_123443316.1 5117165..5118754(+) (pilS) [Pseudomonas atacamensis strain GZ-3]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAACATGCTGCTGGTGGTGTTCCTTGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCCTCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCATTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTGGTCGAGCGTCTGCAACTGTGGCGTAACAATCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAGCCCAGTTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGGATCAATTCCGGCGATTTCACCACGCTGATGGATCCCAACCAATTGCGGCAGATTCTCGACAA
TCTGATACGCAACGCCTGGCGTCACAGTGCGCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCGG
ACAGCCAGTTGGCGGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGAGGAGCAGGCGCATCTGTTTGAGCCG
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595

Multiple sequence alignment