Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB0T70_RS01430 Genome accession   NZ_CP160032
Coordinates   308363..309004 (+) Length   213 a.a.
NCBI ID   WP_002068918.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB44-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303363..314004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0T70_RS01410 (AB0T70_01410) - 303411..303743 (+) 333 WP_000169598.1 hypothetical protein -
  AB0T70_RS01415 (AB0T70_01415) - 303746..304570 (+) 825 WP_002068938.1 putative RNA methyltransferase -
  AB0T70_RS01420 (AB0T70_01420) ponA 304588..307143 (-) 2556 WP_025468065.1 penicillin-binding protein PBP1a -
  AB0T70_RS01425 (AB0T70_01425) pilM 307305..308363 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB0T70_RS01430 (AB0T70_01430) pilN 308363..309004 (+) 642 WP_002068918.1 PilN domain-containing protein Machinery gene
  AB0T70_RS01435 (AB0T70_01435) pilO 309001..309741 (+) 741 WP_002068850.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB0T70_RS01440 (AB0T70_01440) pilP 309752..310279 (+) 528 WP_025468064.1 pilus assembly protein PilP Machinery gene
  AB0T70_RS01445 (AB0T70_01445) pilQ 310342..312507 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AB0T70_RS01450 (AB0T70_01450) aroK 312519..313088 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23971.31 Da        Isoelectric Point: 5.1246

>NTDB_id=1017172 AB0T70_RS01430 WP_002068918.1 308363..309004(+) (pilN) [Acinetobacter baumannii strain AB44-AUFP]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVQVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1017172 AB0T70_RS01430 WP_002068918.1 308363..309004(+) (pilN) [Acinetobacter baumannii strain AB44-AUFP]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCA
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

71.635

97.653

0.7

Multiple sequence alignment