Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABU614_RS11740 Genome accession   NZ_CP159925
Coordinates   2709590..2711005 (-) Length   471 a.a.
NCBI ID   WP_064746446.1    Uniprot ID   A0AAU8MLE0
Organism   Lysobacter firmicutimachus strain SR10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2704590..2716005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU614_RS11725 (ABU614_11725) - 2705588..2707480 (-) 1893 WP_363796235.1 hypothetical protein -
  ABU614_RS11730 (ABU614_11730) pilA2 2707607..2708020 (-) 414 WP_363796236.1 pilin Machinery gene
  ABU614_RS11735 (ABU614_11735) pilA2 2708386..2708817 (-) 432 WP_363796237.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABU614_RS11740 (ABU614_11740) pilR 2709590..2711005 (-) 1416 WP_064746446.1 sigma-54 dependent transcriptional regulator Regulator
  ABU614_RS11745 (ABU614_11745) - 2711099..2712724 (-) 1626 WP_336131245.1 ATP-binding protein -
  ABU614_RS11750 (ABU614_11750) sucC 2712944..2714110 (+) 1167 WP_336131247.1 ADP-forming succinate--CoA ligase subunit beta -
  ABU614_RS11755 (ABU614_11755) sucD 2714123..2714998 (+) 876 WP_064746452.1 succinate--CoA ligase subunit alpha -
  ABU614_RS11760 (ABU614_11760) - 2715118..2715408 (+) 291 WP_064746453.1 DUF1778 domain-containing protein -
  ABU614_RS11765 (ABU614_11765) - 2715405..2715701 (+) 297 WP_363796238.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50695.14 Da        Isoelectric Point: 6.6631

>NTDB_id=1016823 ABU614_RS11740 WP_064746446.1 2709590..2711005(-) (pilR) [Lysobacter firmicutimachus strain SR10]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGIGEARSQLLRNRYDLCLTDMRLPDGSGMELVAEISQKYPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTLAKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAEVVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILQRLAGNQGRLVPRLGDDALEALRAYGFPGNVRELENILERALALAEGEVLNAGDLRLPRLATQGVPADAGANAGSAA
PTAAAAAAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=1016823 ABU614_RS11740 WP_064746446.1 2709590..2711005(-) (pilR) [Lysobacter firmicutimachus strain SR10]
ATGGCTGAAACCCGTAGTGCATTGGTAGTCGACGACGAGCGCGACATTCGCGAGTTGCTCGTCATGACTTTGGGCCGTAT
GGGCCTGCGTTGCGACACCGCGTCCGGCATCGGCGAGGCGCGCAGTCAGCTGCTGCGCAATCGTTACGATTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGAGCTGGTCGCCGAAATCAGTCAGAAATACCCCAATACCCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCGGCGGTGGAAGCACTCAAGGCCGGCGCGTTCGATTTCGTCGCCAAGCCGGT
CGACCTGGCCGTGCTGCGCGATCTCGTGCGTCACGCACTGGAGCTCAACGATACCCGCCGCAGCGCCAGCGAAGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCCTGGCCAAGGTCGCGCGCAGCCAGGCGCCG
GTCTATATCGCCGGCGAATCCGGCGTGGGCAAGGAGTTGGTCGCCCGTACGATCCATTCCGAAGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCGGACGGCGGCACCCTGTTCCTCGACGAGGTTGCCGAG
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCGCAGGCCGAAGT
GGTGGTCGACGTGCGCATCCTGTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGACGGCCGCTTCCGCCAGGACT
TGTACTACCGCATCAACGTTATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGCCTCGACGACCTGCCCGGCCTGGCCGCC
AAGATCCTGCAGCGCCTGGCCGGCAATCAGGGCCGGCTGGTGCCGCGCCTGGGCGACGACGCACTGGAAGCGCTGCGCGC
CTACGGCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTGCTCA
ACGCCGGCGACCTGCGCCTGCCGCGCCTGGCGACCCAAGGCGTCCCGGCCGACGCCGGCGCGAACGCCGGCAGCGCCGCG
CCCACCGCAGCGGCCGCCGCCGCCGTCGATCCGCGCACGCTCAATCCGCGCGACACCGCCACCAGCGCCCTGCCCTCGTA
CATCGAGGAGATCGAGCGCGCGGCGATCCAGCAGGCATTGCAGGAAAACCGCTACAACAAGACCCGCACGGCCGCGGCGC
TGGGCATCACGTTCCGCGCCCTGCGCTACAAGCTCAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.179

99.363

0.618
  pilR Acinetobacter baumannii strain A118

48.017

100

0.488

Multiple sequence alignment