Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ABG809_RS09095 Genome accession   NZ_CP159893
Coordinates   1839279..1839971 (-) Length   230 a.a.
NCBI ID   WP_367561281.1    Uniprot ID   -
Organism   Streptococcus iniae strain QMA0177     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834279..1844971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG809_RS09075 (ABG809_09075) dnaI 1835075..1835977 (-) 903 WP_003101664.1 primosomal protein DnaI -
  ABG809_RS09080 (ABG809_09080) - 1835978..1837165 (-) 1188 WP_003101665.1 DnaD domain protein -
  ABG809_RS09085 (ABG809_09085) nrdR 1837149..1837643 (-) 495 WP_003101666.1 transcriptional regulator NrdR -
  ABG809_RS09090 (ABG809_09090) - 1837789..1839276 (-) 1488 WP_037584827.1 HAMP domain-containing histidine kinase -
  ABG809_RS09095 (ABG809_09095) covR 1839279..1839971 (-) 693 WP_367561281.1 two-component system response regulator CovR Regulator
  ABG809_RS09100 (ABG809_09100) - 1840193..1840725 (-) 533 Protein_1750 DUF177 domain-containing protein -
  ABG809_RS09105 (ABG809_09105) htpX 1840913..1841809 (-) 897 WP_121791613.1 zinc metalloprotease HtpX -
  ABG809_RS09110 (ABG809_09110) - 1841848..1842405 (-) 558 WP_003101671.1 LemA family protein -
  ABG809_RS09115 (ABG809_09115) rsmG 1842550..1843265 (+) 716 Protein_1753 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABG809_RS09120 (ABG809_09120) ktrB 1843355..1844715 (+) 1361 Protein_1754 potassium uptake transporter channel subunit KtrB -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26976.89 Da        Isoelectric Point: 4.5562

>NTDB_id=1016672 ABG809_RS09095 WP_367561281.1 1839279..1839971(-) (covR) [Streptococcus iniae strain QMA0177]
MEYDKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLDTALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMM
MTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETEKKSPNQGIYRDLVLNPQNRSVNRGDEEISLTKR
EYDLLNILMSNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDMQGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1016672 ABG809_RS09095 WP_367561281.1 1839279..1839971(-) (covR) [Streptococcus iniae strain QMA0177]
ATAGAATATGACAAAAAAATTCTAATTGTTGAAGATGAAAAAAATCTTGCAAGGTTTGTTTCATTAGAATTGCAACACGA
AGGTTACGAAGTAACTGTAGAAGTGAATGGTCGTGAAGGACTTGACACAGCGCTTGAAAAAGATTTTGATTTAATCTTGC
TTGATTTGATGTTACCTGAAATGGATGGTTTTGAAGTGACCCGTCGTCTTCAAACTGAAAAAACAACCTACATTATGATG
ATGACAGCACGCGATTCTATCATGGACGTGGTTGCTGGTTTGGATCGTGGTGCAGATGATTATATTGTTAAGCCATTTGC
TATTGAAGAATTATTGGCACGTATTCGTGCAATTTTCCGTCGTCAAGATATTGAAACTGAGAAAAAATCTCCTAATCAAG
GTATTTACCGTGATTTAGTCTTAAATCCACAAAACCGTTCTGTAAACCGTGGAGATGAAGAAATTTCATTGACAAAACGC
GAATATGATTTGTTAAACATTTTAATGAGCAATATGAATCGTGTCATGACGCGTGAAGAGTTGCTGTCAAATGTTTGGAA
ATACGATGAAGCTGTTGAAACAAACGTTGTTGACGTGTATATTCGTTACCTACGTGGAAAAATCGATATGCAAGGACGTG
AGTCCTATATTCAAACTGTTCGTGGAATGGGATATGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.819

98.696

0.817
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.814

98.261

0.657
  vicR Streptococcus mutans UA159

43.29

100

0.435
  micA Streptococcus pneumoniae Cp1015

43.043

100

0.43

Multiple sequence alignment