Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABXU53_RS23885 Genome accession   NZ_CP159886
Coordinates   5102110..5103447 (+) Length   445 a.a.
NCBI ID   WP_354689540.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P118     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5097110..5108447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXU53_RS23860 pgeF 5097253..5097981 (-) 729 WP_003112833.1 peptidoglycan editing factor PgeF -
  ABXU53_RS23865 rluD 5097978..5098940 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABXU53_RS23870 - 5099086..5100111 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  ABXU53_RS23875 - 5100268..5100513 (+) 246 WP_003102591.1 PP0621 family protein -
  ABXU53_RS23880 pilS 5100503..5102095 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  ABXU53_RS23885 pilR 5102110..5103447 (+) 1338 WP_354689540.1 two-component system response regulator PilR Regulator
  ABXU53_RS23890 thiO 5103493..5104587 (-) 1095 WP_023103512.1 glycine oxidase ThiO -
  ABXU53_RS23895 - 5104727..5105227 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  ABXU53_RS23900 - 5105350..5105838 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  ABXU53_RS23905 pilV 5105848..5106372 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  ABXU53_RS23910 - 5106381..5107196 (+) 816 WP_003116262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABXU53_RS23915 - 5107193..5107798 (+) 606 WP_003116263.1 pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49722.09 Da        Isoelectric Point: 6.3891

>NTDB_id=1016569 ABXU53_RS23885 WP_354689540.1 5102110..5103447(+) (pilR) [Pseudomonas aeruginosa strain P118]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQKKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1016569 ABXU53_RS23885 WP_354689540.1 5102110..5103447(+) (pilR) [Pseudomonas aeruginosa strain P118]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGAAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGATATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526
  luxO Vibrio cholerae strain A1552

38.17

100

0.384

Multiple sequence alignment