Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABNX04_RS11970 Genome accession   NZ_CP159868
Coordinates   2528948..2529283 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JLU-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523948..2534283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX04_RS11950 (ABNX04_11950) gcvT 2524554..2525654 (-) 1101 WP_038459167.1 glycine cleavage system aminomethyltransferase GcvT -
  ABNX04_RS11955 (ABNX04_11955) - 2526078..2527748 (+) 1671 WP_038459170.1 SNF2-related protein -
  ABNX04_RS11960 (ABNX04_11960) - 2527770..2528564 (+) 795 WP_007612541.1 YqhG family protein -
  ABNX04_RS11965 (ABNX04_11965) sinI 2528741..2528914 (+) 174 WP_007612543.1 anti-repressor SinI Regulator
  ABNX04_RS11970 (ABNX04_11970) sinR 2528948..2529283 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ABNX04_RS11975 (ABNX04_11975) tasA 2529331..2530116 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ABNX04_RS11980 (ABNX04_11980) sipW 2530181..2530765 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ABNX04_RS11985 (ABNX04_11985) tapA 2530737..2531408 (-) 672 WP_038459173.1 amyloid fiber anchoring/assembly protein TapA -
  ABNX04_RS11990 (ABNX04_11990) - 2531667..2531996 (+) 330 WP_038459175.1 DUF3889 domain-containing protein -
  ABNX04_RS11995 (ABNX04_11995) - 2532037..2532216 (-) 180 WP_022552966.1 YqzE family protein -
  ABNX04_RS12000 (ABNX04_12000) comGG 2532273..2532650 (-) 378 WP_038459177.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABNX04_RS12005 (ABNX04_12005) comGF 2532651..2533151 (-) 501 WP_228842201.1 competence type IV pilus minor pilin ComGF -
  ABNX04_RS12010 (ABNX04_12010) comGE 2533060..2533374 (-) 315 WP_038459179.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABNX04_RS12015 (ABNX04_12015) comGD 2533358..2533795 (-) 438 WP_038459181.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABNX04_RS12020 (ABNX04_12020) comGC 2533785..2534093 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1016283 ABNX04_RS11970 WP_003153104.1 2528948..2529283(+) (sinR) [Bacillus velezensis strain JLU-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1016283 ABNX04_RS11970 WP_003153104.1 2528948..2529283(+) (sinR) [Bacillus velezensis strain JLU-1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment