Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ABNX04_RS12025 | Genome accession | NZ_CP159868 |
| Coordinates | 2534098..2535135 (-) | Length | 345 a.a. |
| NCBI ID | WP_038459183.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain JLU-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2529098..2540135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABNX04_RS11975 (ABNX04_11975) | tasA | 2529331..2530116 (-) | 786 | WP_003153102.1 | biofilm matrix protein TasA | - |
| ABNX04_RS11980 (ABNX04_11980) | sipW | 2530181..2530765 (-) | 585 | WP_012117977.1 | signal peptidase I SipW | - |
| ABNX04_RS11985 (ABNX04_11985) | tapA | 2530737..2531408 (-) | 672 | WP_038459173.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABNX04_RS11990 (ABNX04_11990) | - | 2531667..2531996 (+) | 330 | WP_038459175.1 | DUF3889 domain-containing protein | - |
| ABNX04_RS11995 (ABNX04_11995) | - | 2532037..2532216 (-) | 180 | WP_022552966.1 | YqzE family protein | - |
| ABNX04_RS12000 (ABNX04_12000) | comGG | 2532273..2532650 (-) | 378 | WP_038459177.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ABNX04_RS12005 (ABNX04_12005) | comGF | 2532651..2533151 (-) | 501 | WP_228842201.1 | competence type IV pilus minor pilin ComGF | - |
| ABNX04_RS12010 (ABNX04_12010) | comGE | 2533060..2533374 (-) | 315 | WP_038459179.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| ABNX04_RS12015 (ABNX04_12015) | comGD | 2533358..2533795 (-) | 438 | WP_038459181.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ABNX04_RS12020 (ABNX04_12020) | comGC | 2533785..2534093 (-) | 309 | WP_003153087.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABNX04_RS12025 (ABNX04_12025) | comGB | 2534098..2535135 (-) | 1038 | WP_038459183.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABNX04_RS12030 (ABNX04_12030) | comGA | 2535122..2536192 (-) | 1071 | WP_038459186.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABNX04_RS12035 (ABNX04_12035) | - | 2536389..2537339 (-) | 951 | WP_032874012.1 | magnesium transporter CorA family protein | - |
| ABNX04_RS12040 (ABNX04_12040) | - | 2537485..2538786 (+) | 1302 | WP_038459188.1 | hemolysin family protein | - |
| ABNX04_RS12045 (ABNX04_12045) | - | 2538824..2539654 (-) | 831 | WP_038459190.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39539.87 Da Isoelectric Point: 9.5935
>NTDB_id=1016288 ABNX04_RS12025 WP_038459183.1 2534098..2535135(-) (comGB) [Bacillus velezensis strain JLU-1]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGTTAFIFAFF
RHLHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGTTAFIFAFF
RHLHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=1016288 ABNX04_RS12025 WP_038459183.1 2534098..2535135(-) (comGB) [Bacillus velezensis strain JLU-1]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTACGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTACATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCCCTCTTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAGTCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGTCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTACGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTACATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCCCTCTTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAGTCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGTCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.635 |
93.623 |
0.614 |