Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABWT76_RS22800 Genome accession   NZ_CP159837
Coordinates   5327866..5328231 (-) Length   121 a.a.
NCBI ID   WP_054470163.1    Uniprot ID   A0A0M1JM32
Organism   Planktothricoides raciborskii GIHE-MW2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5322866..5333231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWT76_RS22790 (ABWT76_004525) - 5323587..5327165 (-) 3579 WP_354634995.1 methyl-accepting chemotaxis protein -
  ABWT76_RS22795 (ABWT76_004526) - 5327333..5327854 (-) 522 WP_054470166.1 CheW domain-containing protein -
  ABWT76_RS22800 (ABWT76_004527) pilH 5327866..5328231 (-) 366 WP_054470163.1 response regulator transcription factor Machinery gene
  ABWT76_RS22805 (ABWT76_004528) - 5328972..5330228 (-) 1257 WP_054470161.1 response regulator -
  ABWT76_RS22810 (ABWT76_004529) - 5331859..5332398 (+) 540 WP_255353291.1 reverse transcriptase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13496.71 Da        Isoelectric Point: 5.1746

>NTDB_id=1016116 ABWT76_RS22800 WP_054470163.1 5327866..5328231(-) (pilH) [Planktothricoides raciborskii GIHE-MW2]
MSNVLVVEDSLTQREMITDLLKKSGLTVTVATDGLEALETIQAQPPDIVVLDIVMPRMNGYEVCRRLKSDPKTQHILVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1016116 ABWT76_RS22800 WP_054470163.1 5327866..5328231(-) (pilH) [Planktothricoides raciborskii GIHE-MW2]
ATGAGCAACGTTCTAGTTGTGGAAGACAGTCTGACGCAACGGGAGATGATCACAGACCTCCTGAAAAAGAGTGGTTTAAC
CGTCACAGTCGCGACAGATGGGTTGGAAGCCTTGGAAACAATCCAAGCTCAACCGCCAGATATAGTGGTTTTAGACATTG
TGATGCCCCGGATGAATGGTTATGAAGTCTGTCGGCGGTTGAAATCTGACCCTAAAACCCAACATATCCTCGTGGTTATG
TGTTCATCCAAAGGGGAAGAATTCGATCGCTATTGGGGGATGAAGCAAGGCGCTGATGCTTATATTGCTAAACCCTTTCA
ACCAACTGAGCTAGTGGGAACTGTCAAACAGCTACTACGAGGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1JM32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

73.554

100

0.736
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  vicR Streptococcus mutans UA159

36.667

99.174

0.364

Multiple sequence alignment