Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABXT41_RS05430 Genome accession   NZ_CP159825
Coordinates   1128236..1128712 (+) Length   158 a.a.
NCBI ID   WP_415390505.1    Uniprot ID   -
Organism   Porticoccus sp. Uisw_050_02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1123236..1133712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXT41_RS05405 (ABXT41_05405) rpmA 1124141..1124398 (-) 258 WP_415390502.1 50S ribosomal protein L27 -
  ABXT41_RS05410 (ABXT41_05410) rplU 1124546..1124848 (-) 303 Protein_1052 50S ribosomal protein L21 -
  ABXT41_RS05415 (ABXT41_05415) - 1125101..1126063 (+) 963 WP_415391461.1 polyprenyl synthetase family protein -
  ABXT41_RS05420 (ABXT41_05420) fabA 1126282..1126812 (+) 531 WP_415390503.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  ABXT41_RS05425 (ABXT41_05425) fabB 1126883..1128094 (+) 1212 WP_415390504.1 beta-ketoacyl-ACP synthase I -
  ABXT41_RS05430 (ABXT41_05430) ssb 1128236..1128712 (+) 477 WP_415390505.1 single-stranded DNA-binding protein Machinery gene
  ABXT41_RS05435 (ABXT41_05435) - 1128770..1130125 (-) 1356 WP_415390506.1 MFS transporter -
  ABXT41_RS05440 (ABXT41_05440) uvrA 1130354..1133218 (+) 2865 WP_415390507.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17567.31 Da        Isoelectric Point: 5.0114

>NTDB_id=1016056 ABXT41_RS05430 WP_415390505.1 1128236..1128712(+) (ssb) [Porticoccus sp. Uisw_050_02]
MARGINKVILVGNLGKDPEAKFMPNGNAVTNITVATSETWKDKQTGQQQERTEWHRVVFFNRLAEIASEYLKKGSKIYLE
GSLRTRKWQAQDGQDRYTTEIVASEMQMLDSRGGSSDYQAPTSEQNESPHQTGVTSDNKAVSSSPESGSSTFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1016056 ABXT41_RS05430 WP_415390505.1 1128236..1128712(+) (ssb) [Porticoccus sp. Uisw_050_02]
ATGGCTCGAGGTATTAATAAGGTAATCTTGGTAGGTAATCTAGGTAAAGACCCAGAAGCTAAATTTATGCCAAATGGCAA
TGCTGTGACAAACATAACAGTTGCGACTAGTGAGACCTGGAAAGATAAACAGACCGGACAGCAACAAGAGAGGACCGAAT
GGCATAGAGTTGTATTTTTCAACCGCCTTGCAGAAATTGCAAGTGAGTATCTAAAAAAAGGATCTAAGATTTATCTGGAA
GGATCTTTGCGTACACGAAAGTGGCAAGCACAGGACGGTCAAGATCGCTATACTACAGAAATTGTAGCCAGTGAAATGCA
AATGCTAGATAGTCGAGGAGGATCTTCAGACTATCAGGCTCCTACTTCAGAGCAGAATGAATCCCCACATCAAACCGGAG
TAACGTCAGACAACAAGGCAGTGTCTTCGTCGCCCGAATCAGGATCAAGCACATTTGATGATGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.685

100

0.582
  ssb Vibrio cholerae strain A1552

49.714

100

0.551
  ssb Neisseria gonorrhoeae MS11

44.253

100

0.487
  ssb Neisseria meningitidis MC58

42.286

100

0.468

Multiple sequence alignment