NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	DQL62_RS08365	Genome accession	NZ_LS483300
Coordinates	1642649..1643335 (-)	Length	228 a.a.
NCBI ID	WP_000403096.1	Uniprot ID	Q2YT78
Organism	Staphylococcus aureus strain NCTC7485
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1637649..1648335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL62_RS08320 (NCTC7485_01576)	rpmA	1638490..1638774 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
DQL62_RS08325 (NCTC7485_01577)	-	1638786..1639106 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
DQL62_RS08330 (NCTC7485_01578)	rplU	1639112..1639420 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
DQL62_RS08335 (NCTC7485_01579)	mreD	1639587..1640117 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
DQL62_RS08340 (NCTC7485_01580)	mreC	1640117..1640959 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
DQL62_RS08345	-	1641157..1641276 (-)	120	WP_000840603.1	hypothetical protein	-
DQL62_RS08350 (NCTC7485_01581)	-	1641350..1641823 (-)	474	WP_001236739.1	DUF4930 family protein	-
DQL62_RS08355	-	1641983..1642180 (+)	198	WP_000025835.1	hypothetical protein	-
DQL62_RS08360 (NCTC7485_01582)	-	1642297..1642581 (-)	285	WP_000171863.1	hypothetical protein	-
DQL62_RS08365 (NCTC7485_01583)	ysxA/radC	1642649..1643335 (-)	687	WP_000403096.1	RadC family protein	Machinery gene
DQL62_RS08370 (NCTC7485_01584)	-	1643314..1644040 (-)	727	Protein_1582	prepilin peptidase	-
DQL62_RS08380 (NCTC7485_01585)	-	1644308..1645579 (-)	1272	WP_001108350.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
DQL62_RS08385 (NCTC7485_01586)	-	1645592..1648222 (-)	2631	WP_000425339.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25308.17 Da Isoelectric Point: 6.2400

                                >NTDB_id=1015684 DQL62_RS08365 WP_000403096.1 1642649..1643335(-) (ysxA/radC) [Staphylococcus aureus strain NCTC7485]

MEIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFLSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKESGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=1015684 DQL62_RS08365 WP_000403096.1 1642649..1643335(-) (ysxA/radC) [Staphylococcus aureus strain NCTC7485]

TTGGAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTTGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCGATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGAGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q2YT78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	51.339	98.246	0.504
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373

Detailed information NTG1015684