Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPOKI828_RS08280 | Genome accession | NZ_CP006826 |
| Coordinates | 388913..389923 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664520.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki828 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 383913..394923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI828_RS01910 (HPOKI828_01995) | - | 383994..384368 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| HPOKI828_RS01915 (HPOKI828_02000) | - | 384730..385260 (+) | 531 | WP_235169495.1 | outer membrane protein | - |
| HPOKI828_RS01925 (HPOKI828_02010) | - | 385392..385799 (-) | 408 | WP_025222596.1 | hypothetical protein | - |
| HPOKI828_RS01930 (HPOKI828_02015) | - | 385802..386044 (-) | 243 | WP_015643034.1 | PP0621 family protein | - |
| HPOKI828_RS01935 (HPOKI828_02020) | rsmG | 386038..386574 (-) | 537 | WP_025222597.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPOKI828_RS01940 (HPOKI828_02025) | queA | 386571..387608 (-) | 1038 | WP_025222598.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPOKI828_RS01945 (HPOKI828_02030) | tatC | 387612..388370 (-) | 759 | WP_025222599.1 | twin-arginine translocase subunit TatC | - |
| HPOKI828_RS01950 (HPOKI828_02035) | tatB | 388363..388845 (-) | 483 | WP_025222600.1 | Sec-independent protein translocase protein TatB | - |
| HPOKI828_RS08280 (HPOKI828_02040) | ruvB | 388913..389923 (-) | 1011 | WP_000664520.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPOKI828_RS08285 (HPOKI828_02045) | panB | 389924..390736 (-) | 813 | WP_025222601.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPOKI828_RS01965 (HPOKI828_02050) | - | 390886..391608 (+) | 723 | WP_025222602.1 | hypothetical protein | - |
| HPOKI828_RS01970 (HPOKI828_02055) | - | 391598..392446 (+) | 849 | WP_025222603.1 | outer membrane beta-barrel protein | - |
| HPOKI828_RS01975 (HPOKI828_02060) | - | 392455..393399 (+) | 945 | WP_038420969.1 | outer membrane beta-barrel protein | - |
| HPOKI828_RS01980 (HPOKI828_02065) | - | 393409..394731 (+) | 1323 | WP_025222605.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37337.30 Da Isoelectric Point: 6.0715
>NTDB_id=101418 HPOKI828_RS08280 WP_000664520.1 388913..389923(-) (ruvB) [Helicobacter pylori oki828]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=101418 HPOKI828_RS08280 WP_000664520.1 388913..389923(-) (ruvB) [Helicobacter pylori oki828]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTCTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCCATTTGCGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
CCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCAATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGTTCAGGCCCAGCGGCTCAAACTATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTCTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCCATTTGCGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
CCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCAATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGTTCAGGCCCAGCGGCTCAAACTATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae R6 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae D39 |
50.774 |
96.131 |
0.488 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |