Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | HPOKI828_RS04295 | Genome accession | NZ_CP006826 |
| Coordinates | 894002..894553 (-) | Length | 183 a.a. |
| NCBI ID | WP_025222949.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki828 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 889002..899553
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI828_RS04275 (HPOKI828_04465) | ruvC | 889482..889955 (-) | 474 | WP_001221180.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HPOKI828_RS04280 (HPOKI828_04470) | - | 890087..890818 (+) | 732 | WP_025222947.1 | NYN domain-containing protein | - |
| HPOKI828_RS04290 (HPOKI828_04480) | - | 891340..893676 (-) | 2337 | WP_049819150.1 | DUF3519 domain-containing protein | - |
| HPOKI828_RS04295 (HPOKI828_04485) | ruvA | 894002..894553 (-) | 552 | WP_025222949.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HPOKI828_RS04300 (HPOKI828_04490) | - | 894578..896422 (-) | 1845 | WP_025222950.1 | FapA family protein | - |
| HPOKI828_RS04305 (HPOKI828_04495) | murJ | 896515..897975 (+) | 1461 | WP_025222951.1 | murein biosynthesis integral membrane protein MurJ | - |
| HPOKI828_RS04310 (HPOKI828_04500) | cysS | 897976..899373 (+) | 1398 | WP_025222952.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20125.70 Da Isoelectric Point: 9.4305
>NTDB_id=101400 HPOKI828_RS04295 WP_025222949.1 894002..894553(-) (ruvA) [Helicobacter pylori oki828]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS
Nucleotide
Download Length: 552 bp
>NTDB_id=101400 HPOKI828_RS04295 WP_025222949.1 894002..894553(-) (ruvA) [Helicobacter pylori oki828]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAGGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAATATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGTTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAGGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAATATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
95.082 |
100 |
0.951 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |