Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABNK30_RS03995 Genome accession   NZ_CP159509
Coordinates   883814..884872 (+) Length   352 a.a.
NCBI ID   WP_005410860.1    Uniprot ID   A0A854DVP1
Organism   Stenotrophomonas maltophilia strain SM911     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 878814..889872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK30_RS03970 - 878872..879360 (+) 489 WP_049404061.1 CS1 type fimbrial major subunit -
  ABNK30_RS03975 - 879421..879753 (+) 333 Protein_777 usher protein -
  ABNK30_RS03980 - 879761..880165 (+) 405 WP_239502980.1 hypothetical protein -
  ABNK30_RS03985 - 880296..880940 (-) 645 WP_006466035.1 hypothetical protein -
  ABNK30_RS03990 - 881171..883594 (-) 2424 WP_111108997.1 penicillin-binding protein 1A -
  ABNK30_RS03995 pilM 883814..884872 (+) 1059 WP_005410860.1 pilus assembly protein PilM Machinery gene
  ABNK30_RS04000 - 884872..885762 (+) 891 WP_049404031.1 PilN domain-containing protein -
  ABNK30_RS04005 pilO 885759..886415 (+) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  ABNK30_RS04010 - 886442..886945 (+) 504 WP_044571441.1 pilus assembly protein PilP -
  ABNK30_RS04015 - 886967..888934 (+) 1968 WP_005410855.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.38 Da        Isoelectric Point: 4.4047

>NTDB_id=1013923 ABNK30_RS03995 WP_005410860.1 883814..884872(+) (pilM) [Stenotrophomonas maltophilia strain SM911]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1013923 ABNK30_RS03995 WP_005410860.1 883814..884872(+) (pilM) [Stenotrophomonas maltophilia strain SM911]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACGCCGTGGAACCTCTTCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCATTGGAGCTGGGG
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCGTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGACTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCTACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGTGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAATCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DVP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment