Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABVR74_RS00445 | Genome accession | NZ_CP159484 |
| Coordinates | 86076..86576 (+) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain CBA3648 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 81076..91576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVR74_RS00430 (ABVR74_00430) | - | 82718..84184 (-) | 1467 | WP_017865200.1 | amino acid permease | - |
| ABVR74_RS00435 (ABVR74_00435) | - | 84707..85561 (+) | 855 | WP_012898664.1 | undecaprenyl-diphosphate phosphatase | - |
| ABVR74_RS00440 (ABVR74_00440) | rpsF | 85753..86046 (+) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| ABVR74_RS00445 (ABVR74_00445) | ssb | 86076..86576 (+) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| ABVR74_RS00450 (ABVR74_00450) | rpsR | 86750..86995 (+) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| ABVR74_RS00455 (ABVR74_00455) | - | 87195..87968 (+) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| ABVR74_RS00460 (ABVR74_00460) | - | 88049..88357 (-) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| ABVR74_RS00465 (ABVR74_00465) | - | 88395..89243 (-) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| ABVR74_RS00470 (ABVR74_00470) | gnd | 89608..90513 (+) | 906 | WP_038603774.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=1013795 ABVR74_RS00445 WP_003131953.1 86076..86576(+) (ssb) [Lactococcus lactis subsp. lactis strain CBA3648]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=1013795 ABVR74_RS00445 WP_003131953.1 86076..86576(+) (ssb) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |