Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABWH88_RS09730 Genome accession   NZ_CP159479
Coordinates   1995881..1996345 (-) Length   154 a.a.
NCBI ID   WP_041644868.1    Uniprot ID   -
Organism   Marinobacter adhaerens strain ac5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1983397..2000588 1995881..1996345 within 0


Gene organization within MGE regions


Location: 1983397..2000588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH88_RS09650 (ABWH88_09625) - 1983397..1984785 (-) 1389 WP_041644873.1 helix-turn-helix domain-containing protein -
  ABWH88_RS09655 (ABWH88_09630) - 1985185..1985550 (+) 366 WP_041644872.1 hypothetical protein -
  ABWH88_RS09660 (ABWH88_09635) - 1985818..1986180 (-) 363 WP_014575770.1 hypothetical protein -
  ABWH88_RS09665 (ABWH88_09640) - 1986274..1987353 (-) 1080 WP_041644870.1 toprim domain-containing protein -
  ABWH88_RS09670 (ABWH88_09645) - 1987432..1987599 (-) 168 WP_169702120.1 hypothetical protein -
  ABWH88_RS09675 (ABWH88_09650) - 1987681..1987974 (-) 294 WP_014575767.1 hypothetical protein -
  ABWH88_RS09680 (ABWH88_09655) - 1988050..1989822 (-) 1773 WP_014575766.1 VWA domain-containing protein -
  ABWH88_RS09685 (ABWH88_09660) - 1989833..1990747 (-) 915 WP_041644869.1 DUF3150 domain-containing protein -
  ABWH88_RS09690 (ABWH88_09665) - 1990876..1991577 (-) 702 WP_375581858.1 hypothetical protein -
  ABWH88_RS09695 (ABWH88_09670) - 1991580..1992539 (-) 960 WP_014575763.1 AAA family ATPase -
  ABWH88_RS09700 (ABWH88_09675) - 1992842..1993846 (-) 1005 WP_014575762.1 YqaJ viral recombinase family protein -
  ABWH88_RS09705 (ABWH88_09680) - 1993918..1994211 (-) 294 WP_169702119.1 hypothetical protein -
  ABWH88_RS09710 (ABWH88_09685) - 1994286..1994720 (-) 435 WP_375581859.1 hypothetical protein -
  ABWH88_RS09715 (ABWH88_09690) - 1994722..1995243 (-) 522 WP_375581860.1 recombinase RecT -
  ABWH88_RS09720 (ABWH88_09695) - 1995301..1995621 (+) 321 WP_014575759.1 hypothetical protein -
  ABWH88_RS09725 (ABWH88_09700) - 1995608..1995799 (-) 192 WP_143743805.1 hypothetical protein -
  ABWH88_RS09730 (ABWH88_09705) ssb 1995881..1996345 (-) 465 WP_041644868.1 single-stranded DNA-binding protein Machinery gene
  ABWH88_RS09735 (ABWH88_09710) - 1996348..1996689 (-) 342 WP_014575756.1 hypothetical protein -
  ABWH88_RS09740 (ABWH88_09715) - 1996689..1996925 (-) 237 WP_014575755.1 hypothetical protein -
  ABWH88_RS09745 (ABWH88_09720) - 1997396..1997686 (-) 291 WP_149600523.1 hypothetical protein -
  ABWH88_RS09750 (ABWH88_09725) - 1998188..1999078 (-) 891 Protein_1901 IS3 family transposase -
  ABWH88_RS09755 (ABWH88_09730) - 1999143..2000312 (+) 1170 WP_014575753.1 IS30 family transposase -
  ABWH88_RS09760 (ABWH88_09735) - 2000289..2000588 (-) 300 Protein_1903 transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17401.31 Da        Isoelectric Point: 6.4868

>NTDB_id=1013754 ABWH88_RS09730 WP_041644868.1 1995881..1996345(-) (ssb) [Marinobacter adhaerens strain ac5]
MLNKAQLIGRLGQKDVRSTPSGMQVASYSIATTKSLKDKDTGEWKENTEWHRCVSFNKTAEHIGMNVEPGDLLFLEGELR
TRKWQTQSGEDRYTTEIVVNDFPRKLPKYFSKNGSQQAAPAPQSQQQAHTSPSQPGHLEQPPVEAYGFDDDYPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1013754 ABWH88_RS09730 WP_041644868.1 1995881..1996345(-) (ssb) [Marinobacter adhaerens strain ac5]
ATGCTTAACAAAGCACAACTCATTGGCCGTCTCGGTCAAAAAGATGTTCGTTCCACCCCAAGCGGCATGCAGGTGGCTTC
TTATTCAATCGCTACAACCAAGTCTCTCAAGGACAAGGATACTGGCGAATGGAAAGAGAACACCGAATGGCACCGTTGCG
TCAGTTTCAACAAGACTGCTGAGCACATCGGCATGAACGTTGAACCTGGAGATCTCTTGTTCCTTGAGGGCGAGTTGAGA
ACCAGGAAATGGCAAACCCAGAGCGGTGAAGATCGTTACACCACAGAAATCGTGGTCAATGACTTCCCACGCAAGCTGCC
GAAGTATTTTTCCAAAAATGGTTCGCAGCAAGCCGCTCCCGCGCCACAGTCCCAACAGCAGGCTCATACTTCACCGAGTC
AGCCTGGGCATCTGGAACAGCCGCCAGTTGAAGCCTATGGCTTTGACGACGACTACCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

42.614

100

0.487
  ssb Glaesserella parasuis strain SC1401

38.889

100

0.455
  ssb Neisseria meningitidis MC58

36.571

100

0.416
  ssb Neisseria gonorrhoeae MS11

36.571

100

0.416

Multiple sequence alignment