Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABWH88_RS08115 Genome accession   NZ_CP159479
Coordinates   1712813..1713337 (-) Length   174 a.a.
NCBI ID   WP_008174919.1    Uniprot ID   G6YW08
Organism   Marinobacter adhaerens strain ac5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1707813..1718337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH88_RS08090 (ABWH88_08095) mshL 1708273..1709985 (-) 1713 WP_216688061.1 pilus (MSHA type) biogenesis protein MshL -
  ABWH88_RS08095 (ABWH88_08100) - 1710003..1710353 (-) 351 WP_014575973.1 hypothetical protein -
  ABWH88_RS08100 (ABWH88_08105) gspM 1710355..1711044 (-) 690 WP_014575972.1 type II secretion system protein GspM -
  ABWH88_RS08105 (ABWH88_08110) - 1711044..1711649 (-) 606 WP_041644930.1 PilN domain-containing protein -
  ABWH88_RS08110 (ABWH88_08115) - 1711646..1712578 (-) 933 WP_227499687.1 hypothetical protein -
  ABWH88_RS08115 (ABWH88_08120) ssb 1712813..1713337 (-) 525 WP_008174919.1 single-stranded DNA-binding protein Machinery gene
  ABWH88_RS08120 (ABWH88_08125) - 1713395..1714765 (-) 1371 WP_014575969.1 MFS transporter -
  ABWH88_RS08125 (ABWH88_08130) uvrA 1714951..1717791 (+) 2841 WP_014575968.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18985.02 Da        Isoelectric Point: 4.9464

>NTDB_id=1013750 ABWH88_RS08115 WP_008174919.1 1712813..1713337(-) (ssb) [Marinobacter adhaerens strain ac5]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMSQGAPAGRPQQSGYNAPAGQQNNPPPQSGGYSNQPSQGS
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1013750 ABWH88_RS08115 WP_008174919.1 1712813..1713337(-) (ssb) [Marinobacter adhaerens strain ac5]
ATGGCACGAGGCGTAAACAAGGTAATCCTAATCGGTAATCTGGGGCAGGACCCGGATACCCGCTACACCCCCAACGGCAA
TGCCGTAGTAAACCTGAACCTTGCAACAGACGAAAGCTACAAGGATCGTCAGACCGGTCAGCTGGTGCCGAAAACCGAAT
GGCACCGGGTTGTCATGTTCGGTAAGATCGCCGAAGTTGCGGGACAGTACCTGCGAAAGGGCTCGAAGGTTTATATTGAG
GGCAAGCTTCAGACCCGCAAATGGCAGAACAAGGAAGGGCAGGATGTCTATACCACCGAGGTTGTGGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGTGGCGGCGAAGGCGGAATGAGCCAGGGCGCGCCGGCAGGGCGGCCTCAGCAGTCCG
GCTACAACGCGCCGGCTGGACAGCAGAACAATCCGCCACCGCAATCCGGTGGCTACAGTAACCAGCCCTCGCAGGGCAGC
ATGCCCGAACCGGTTGACGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G6YW08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.598
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.569
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.46
  ssb Neisseria meningitidis MC58

44.134

100

0.454

Multiple sequence alignment