Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPOKI673_RS08185 | Genome accession | NZ_CP006825 |
| Coordinates | 388443..389453 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664522.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki673 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 383443..394453
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI673_RS01905 (HPOKI673_02000) | chpA | 383531..383905 (-) | 375 | WP_015086992.1 | chemotaxis response regulator CheY | Regulator |
| HPOKI673_RS01910 (HPOKI673_02005) | - | 384195..384797 (+) | 603 | WP_025222595.1 | outer membrane protein | - |
| HPOKI673_RS01920 (HPOKI673_02015) | - | 384928..385335 (-) | 408 | WP_025313710.1 | hypothetical protein | - |
| HPOKI673_RS01925 (HPOKI673_02020) | - | 385338..385580 (-) | 243 | WP_025313711.1 | PP0621 family protein | - |
| HPOKI673_RS01930 (HPOKI673_02025) | rsmG | 385574..386110 (-) | 537 | WP_025313712.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPOKI673_RS01935 (HPOKI673_02030) | queA | 386107..387144 (-) | 1038 | WP_025313713.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPOKI673_RS01940 (HPOKI673_02035) | tatC | 387148..387906 (-) | 759 | WP_025313714.1 | twin-arginine translocase subunit TatC | - |
| HPOKI673_RS01945 (HPOKI673_02040) | tatB | 387899..388375 (-) | 477 | WP_025313715.1 | Sec-independent protein translocase protein TatB | - |
| HPOKI673_RS08185 (HPOKI673_02045) | ruvB | 388443..389453 (-) | 1011 | WP_000664522.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPOKI673_RS08190 (HPOKI673_02050) | panB | 389454..390266 (-) | 813 | WP_025313716.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPOKI673_RS01960 (HPOKI673_02055) | - | 390415..391137 (+) | 723 | WP_025313717.1 | hypothetical protein | - |
| HPOKI673_RS01965 (HPOKI673_02060) | - | 391127..391981 (+) | 855 | WP_025313718.1 | outer membrane beta-barrel protein | - |
| HPOKI673_RS01970 (HPOKI673_02065) | - | 391990..392934 (+) | 945 | WP_038419094.1 | outer membrane protein | - |
| HPOKI673_RS01975 (HPOKI673_02070) | - | 392944..394266 (+) | 1323 | WP_025313720.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37293.24 Da Isoelectric Point: 6.0715
>NTDB_id=101375 HPOKI673_RS08185 WP_000664522.1 388443..389453(-) (ruvB) [Helicobacter pylori oki673]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=101375 HPOKI673_RS08185 WP_000664522.1 388443..389453(-) (ruvB) [Helicobacter pylori oki673]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGCGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATATCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCTGCTAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACACCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTACGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACAATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGCGCAGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATATCCGGCTATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGTGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCTGCTAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACACCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTACGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACAATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
54.18 |
96.131 |
0.521 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |