Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABWH87_RS08965 Genome accession   NZ_CP159474
Coordinates   1791646..1792173 (-) Length   175 a.a.
NCBI ID   WP_109767088.1    Uniprot ID   A0A3A8AEE1
Organism   Oceaniradius stylonematis strain ac10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1786646..1797173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH87_RS08945 (ABWH87_08955) - 1786895..1787523 (-) 629 Protein_1759 LysE family translocator -
  ABWH87_RS08950 (ABWH87_08960) gyrA 1787530..1790251 (-) 2722 Protein_1760 DNA gyrase subunit A -
  ABWH87_RS08955 (ABWH87_08965) - 1790548..1791174 (+) 627 WP_109767089.1 MarC family protein -
  ABWH87_RS08960 (ABWH87_08970) - 1791198..1791632 (-) 435 WP_375567700.1 hypothetical protein -
  ABWH87_RS08965 (ABWH87_08975) ssb 1791646..1792173 (-) 528 WP_109767088.1 single-stranded DNA-binding protein Machinery gene
  ABWH87_RS08970 (ABWH87_08980) uvrA 1792482..1795413 (+) 2932 Protein_1764 excinuclease ABC subunit UvrA -
  ABWH87_RS08975 (ABWH87_08985) - 1795459..1795845 (-) 387 WP_375567702.1 type II toxin-antitoxin system VapC family toxin -
  ABWH87_RS08980 (ABWH87_08990) - 1795842..1796123 (-) 282 WP_375567703.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ABWH87_RS08985 (ABWH87_08995) - 1796186..1796995 (+) 810 WP_375567705.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19131.99 Da        Isoelectric Point: 5.0866

>NTDB_id=1013713 ABWH87_RS08965 WP_109767088.1 1791646..1792173(-) (ssb) [Oceaniradius stylonematis strain ac10]
MAGSVNKVILVGNLGADPEIRRLNSGDPVVNLSVATSETWRDKQSGERRERTEWHRVVIFNENLAKVAENYLKKGAKVYI
EGQLQTRKWTDQNGQDKYTTEIVLQRFRGELQMLDSRADAEGGYGGRGQGGGYGNDRVGQGAGGMDRGGGQQGGEQGGQQ
GGNDFVRDLDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1013713 ABWH87_RS08965 WP_109767088.1 1791646..1792173(-) (ssb) [Oceaniradius stylonematis strain ac10]
ATGGCAGGCAGCGTCAACAAGGTTATTCTCGTCGGCAATCTGGGGGCGGACCCGGAGATTCGGCGGCTGAATTCGGGCGA
TCCGGTGGTCAATCTGTCGGTGGCAACGTCCGAGACATGGCGCGACAAACAGTCGGGCGAGCGCCGCGAGCGCACCGAAT
GGCATCGCGTGGTGATCTTCAACGAGAATCTCGCCAAGGTGGCCGAGAACTATCTGAAGAAGGGCGCCAAGGTCTATATC
GAGGGCCAGCTGCAGACGCGCAAATGGACCGACCAGAACGGCCAGGACAAATACACGACCGAGATCGTGCTGCAGCGCTT
CCGCGGCGAATTGCAGATGCTCGACAGCCGCGCCGACGCCGAAGGCGGCTATGGCGGCCGCGGGCAGGGCGGCGGCTATG
GCAATGACCGCGTCGGGCAGGGCGCCGGCGGCATGGATCGCGGCGGCGGTCAGCAGGGTGGCGAGCAGGGCGGCCAACAG
GGCGGCAACGACTTTGTCCGCGATCTCGATGACGAGATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A8AEE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

100

0.509
  ssb Glaesserella parasuis strain SC1401

61.94

76.571

0.474
  ssb Neisseria meningitidis MC58

39.106

100

0.4
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.4

Multiple sequence alignment