Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABWH95_RS16935 Genome accession   NZ_CP159471
Coordinates   3475801..3476316 (-) Length   171 a.a.
NCBI ID   WP_151979441.1    Uniprot ID   -
Organism   Roseovarius mucosus strain ac13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3470801..3481316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH95_RS16915 - 3472431..3472715 (+) 285 WP_008281023.1 DUF1330 domain-containing protein -
  ABWH95_RS16920 - 3472740..3473027 (+) 288 WP_081506190.1 DUF1330 domain-containing protein -
  ABWH95_RS16925 - 3473081..3473626 (+) 546 WP_375553573.1 histidine phosphatase family protein -
  ABWH95_RS16930 typA 3473663..3475483 (-) 1821 WP_008281019.1 translational GTPase TypA -
  ABWH95_RS16935 ssb 3475801..3476316 (-) 516 WP_151979441.1 single-stranded DNA-binding protein Machinery gene
  ABWH95_RS16940 - 3476509..3477099 (+) 591 WP_081506187.1 lytic transglycosylase domain-containing protein -
  ABWH95_RS16945 - 3477112..3478773 (-) 1662 WP_375553574.1 ABC transporter substrate-binding protein -
  ABWH95_RS16950 - 3478867..3479673 (-) 807 WP_008281015.1 AraC family transcriptional regulator -
  ABWH95_RS16955 - 3479880..3481043 (+) 1164 WP_375553575.1 isovaleryl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18319.08 Da        Isoelectric Point: 5.3255

>NTDB_id=1013701 ABWH95_RS16935 WP_151979441.1 3475801..3476316(-) (ssb) [Roseovarius mucosus strain ac13]
MSGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNSGERRERTEWHTVAIFSEGLVRVAEQYLRKGSKVYL
EGKLQTRKWQDQSGQDKYSTEIVLQGFDATLVMLDGRGEGGASGGGGGSYGGGQDQGYGGDYGGDYGSSPAPASSGGGSR
PARDMDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1013701 ABWH95_RS16935 WP_151979441.1 3475801..3476316(-) (ssb) [Roseovarius mucosus strain ac13]
ATGTCCGGCTCTGTTAACAAGGTAATTCTCATCGGCAATCTGGGCCGCGACCCCGAGGTCCGGACCTTTCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACCTCCGAAACGTGGAAGGATCGCAACAGCGGCGAACGCCGCGAACGCACCGAAT
GGCACACCGTCGCCATCTTCTCCGAAGGGTTGGTGCGCGTGGCCGAGCAATATCTGCGCAAAGGCTCCAAGGTTTATTTG
GAGGGCAAGCTGCAAACCCGCAAATGGCAGGATCAGTCCGGTCAGGACAAATACAGCACCGAAATCGTGCTGCAAGGCTT
TGATGCAACCCTCGTCATGCTTGATGGGCGTGGCGAAGGCGGGGCCAGTGGTGGCGGCGGCGGCAGCTATGGCGGCGGTC
AGGATCAGGGCTACGGCGGCGATTATGGCGGCGACTACGGGTCTTCCCCGGCCCCCGCATCAAGCGGCGGTGGGTCGCGC
CCCGCGCGCGATATGGATGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.526
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.52
  ssb Neisseria meningitidis MC58

45.856

100

0.485
  ssb Neisseria gonorrhoeae MS11

45.856

100

0.485

Multiple sequence alignment