Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | WHO68_RS02550 | Genome accession | NZ_CP159467 |
| Coordinates | 564103..564648 (+) | Length | 181 a.a. |
| NCBI ID | WP_003255446.1 | Uniprot ID | I7CBQ6 |
| Organism | Pseudomonas putida strain KT2440 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 559103..569648
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHO68_RS02535 (WHO68_02535) | bfr | 559198..559662 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| WHO68_RS02540 (WHO68_02540) | uvrA | 559735..562569 (-) | 2835 | WP_010951778.1 | excinuclease ABC subunit UvrA | - |
| WHO68_RS02545 (WHO68_02545) | - | 562699..564093 (+) | 1395 | WP_010951779.1 | MFS transporter | - |
| WHO68_RS02550 (WHO68_02550) | ssb | 564103..564648 (+) | 546 | WP_003255446.1 | single-stranded DNA-binding protein | Machinery gene |
| WHO68_RS02555 (WHO68_02555) | - | 564739..566121 (-) | 1383 | WP_020192246.1 | PLP-dependent aminotransferase family protein | - |
| WHO68_RS02560 (WHO68_02560) | - | 566322..567107 (+) | 786 | WP_049588015.1 | TSUP family transporter | - |
| WHO68_RS02565 (WHO68_02565) | - | 567129..567890 (+) | 762 | WP_010951782.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20059.16 Da Isoelectric Point: 5.9286
>NTDB_id=1013643 WHO68_RS02550 WP_003255446.1 564103..564648(+) (ssb) [Pseudomonas putida strain KT2440]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=1013643 WHO68_RS02550 WP_003255446.1 564103..564648(+) (ssb) [Pseudomonas putida strain KT2440]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGCGACCCGTACAACCAAGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGCGACCCGTACAACCAAGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |
| ssb | Neisseria gonorrhoeae MS11 |
48.634 |
100 |
0.492 |