Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ68_RS14080 Genome accession   NZ_AP027515
Coordinates   2864486..2865115 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LR-29-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2859486..2870115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ68_RS14065 (VEE08_26970) helD 2859728..2861782 (-) 2055 WP_001295354.1 DNA helicase IV -
  AABJ68_RS14070 (VEE08_26980) yccF 2861905..2862351 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABJ68_RS14075 (VEE08_26990) yccS 2862361..2864523 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AABJ68_RS14080 (VEE08_27000) sxy/tfoX 2864486..2865115 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ68_RS14085 (VEE08_27010) sulA 2865334..2865843 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ68_RS14090 (VEE08_27030) ompA 2866200..2867252 (+) 1053 WP_001307702.1 porin OmpA -
  AABJ68_RS14095 (VEE08_27040) matP 2867328..2867780 (-) 453 WP_000877162.1 macrodomain Ter protein MatP -
  AABJ68_RS14100 (VEE08_27050) ycbZ 2867966..2869726 (+) 1761 WP_000156471.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101357 AABJ68_RS14080 WP_000839153.1 2864486..2865115(-) (sxy/tfoX) [Escherichia coli strain LR-29-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101357 AABJ68_RS14080 WP_000839153.1 2864486..2865115(-) (sxy/tfoX) [Escherichia coli strain LR-29-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment