Detailed information NTG1013429

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N011_RS14405
• Genome accession: NZ_CP159362
• Coordinates: 3140794..3141666 (-)
• Length: 290 a.a.
• NCBI ID: WP_024695104.1
• Uniprot ID: A0AAU8LC06
• Organism: Pseudomonas syringae CC1417
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3135794..3146666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N011_RS14365 (N011_14365)	-	3135925..3136155 (-)	231	WP_354676183.1	hypothetical protein	-
N011_RS14370 (N011_14370)	-	3136422..3137720 (-)	1299	WP_024696211.1	NAD(P)/FAD-dependent oxidoreductase	-
N011_RS14375 (N011_14375)	-	3137784..3137957 (-)	174	WP_032610814.1	DUF3094 family protein	-
N011_RS14380 (N011_14380)	-	3137978..3138511 (-)	534	WP_024696212.1	MOSC domain-containing protein	-
N011_RS14385 (N011_14385)	-	3138508..3139137 (-)	630	WP_024685626.1	DUF1780 domain-containing protein	-
N011_RS14390 (N011_14390)	-	3139263..3139724 (+)	462	WP_024696213.1	hypothetical protein	-
N011_RS14395 (N011_14395)	yacG	3139968..3140177 (-)	210	WP_024684958.1	DNA gyrase inhibitor YacG	-
N011_RS14400 (N011_14400)	coaE	3140174..3140797 (-)	624	WP_024684957.1	dephospho-CoA kinase	-
N011_RS14405 (N011_14405)	pilD	3140794..3141666 (-)	873	WP_024695104.1	A24 family peptidase	Machinery gene
N011_RS14410 (N011_14410)	pilC	3141669..3142886 (-)	1218	WP_024695105.1	type II secretion system F family protein	Machinery gene
N011_RS14415 (N011_14415)	pilB	3142889..3144583 (-)	1695	WP_024695106.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N011_RS14420 (N011_14420)	-	3144810..3145238 (+)	429	WP_024695107.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
N011_RS14430 (N011_14430)	-	3145505..3146050 (-)	546	WP_024695108.1	DUF1523 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31956.05 Da
• Isoelectric Point: 7.6618

>NTDB_id=1013429 N011_RS14405 WP_024695104.1 3140794..3141666(-) (pilD) [Pseudomonas syringae CC1417]
MPLLDFLASSMLAFVIFSGVLGLLVGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPEQSPFNLILPHSSCPHCAHRIR
PWENVPVISYLLLRGKCSQCKSAISKRYPLVELACALLSAYVAWHFDFGWQAAAMLVLSWGLLAMSLIDADTQLLPDSLV
LPLMWLGLIVNTFGLFTSLSDALWGAVAGYLALWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILMRVRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1013429 N011_RS14405 WP_024695104.1 3140794..3141666(-) (pilD) [Pseudomonas syringae CC1417]
ATGCCCCTTCTCGATTTCCTGGCCAGCTCGATGCTGGCCTTTGTTATTTTCAGTGGCGTGCTTGGCCTGCTGGTCGGAAG
CTTCCTCAACGTCGTGGTGTATCGCCTGCCGAAGATGATGGAGCGTGACTGGAAAGCCCAGTCGCGGGAAATGCTGGGCC
TGCCTGCCGAGCCTGAACAGTCCCCTTTCAACCTGATTCTCCCGCACTCCAGTTGCCCACACTGCGCCCACAGGATTCGT
CCCTGGGAGAACGTGCCGGTCATCAGCTACCTGTTGCTGCGCGGCAAGTGCTCTCAATGCAAGTCTGCGATCAGCAAGCG
TTATCCACTGGTCGAACTGGCCTGCGCGCTGCTGTCGGCCTACGTCGCCTGGCATTTCGACTTTGGCTGGCAAGCGGCGG
CGATGCTGGTGTTGAGTTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGACACGCAGTTGCTGCCGGACTCACTGGTG
CTGCCGCTGATGTGGCTGGGGCTGATCGTGAACACGTTCGGCCTCTTCACCTCGTTGAGTGACGCGCTGTGGGGCGCGGT
CGCTGGCTACCTGGCCTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCAATGCTCGGGGCGTGGGGCGGCTGGCAGATTCTGCCACTGACCATTCTGCTGTCATCGCTGGTAGGC
GCCGTTCTGGGCGTGATCCTGATGCGCGTGCGCAATGTGGAATCCGGTACGCCAATCCCCTTCGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.273	94.828	0.524
pilD	Acinetobacter baumannii D1279779	52.113	97.931	0.51
pilD	Vibrio campbellii strain DS40M4	53.48	94.138	0.503
pilD	Acinetobacter nosocomialis M2	51.408	97.931	0.503
pilD	Neisseria gonorrhoeae MS11	51.55	88.966	0.459