Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N011_RS13340 Genome accession   NZ_CP159362
Coordinates   2926301..2926855 (+) Length   184 a.a.
NCBI ID   WP_004883704.1    Uniprot ID   A0A1M7QFI4
Organism   Pseudomonas syringae CC1417     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2921301..2931855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N011_RS13330 (N011_13330) uvrA 2921874..2924708 (-) 2835 WP_024687028.1 excinuclease ABC subunit UvrA -
  N011_RS13335 (N011_13335) - 2924897..2926291 (+) 1395 WP_024687027.1 MFS transporter -
  N011_RS13340 (N011_13340) ssb 2926301..2926855 (+) 555 WP_004883704.1 single-stranded DNA-binding protein Machinery gene
  N011_RS13345 (N011_13345) - 2927097..2927225 (+) 129 Protein_2540 NADH:flavin oxidoreductase -
  N011_RS13350 (N011_13350) - 2927464..2928282 (-) 819 WP_024694779.1 alpha/beta fold hydrolase -
  N011_RS13355 (N011_13355) - 2928565..2928918 (+) 354 WP_050586062.1 DoxX family protein -
  N011_RS13360 (N011_13360) - 2929044..2931320 (+) 2277 WP_024694777.1 mechanosensitive ion channel domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20530.69 Da        Isoelectric Point: 5.9454

>NTDB_id=1013425 N011_RS13340 WP_004883704.1 2926301..2926855(+) (ssb) [Pseudomonas syringae CC1417]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPPQQNYNQQPPQQRES
RPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1013425 N011_RS13340 WP_004883704.1 2926301..2926855(+) (ssb) [Pseudomonas syringae CC1417]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGACCGGTCAGAAAGTCGAAAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAG
GGCAAGCTTCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACGCACAACAAGGCCAGGGTGGCGGCAACTACAACCAGTCTGCCCCTC
GTCCACAGCAGTCGCGCCCTCAGCAGTCGGCTCCGCCACAGCAGAACTACAATCAGCAACCACCTCAGCAACGCGAATCC
CGCCCTGCGCCACAGCAGCAAGCGCCGCAGCCAGCTGCTGATTTCGACAGTTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M7QFI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.676

100

0.56
  ssb Glaesserella parasuis strain SC1401

46.907

100

0.495
  ssb Neisseria gonorrhoeae MS11

48.37

100

0.484
  ssb Neisseria meningitidis MC58

45.902

99.457

0.457

Multiple sequence alignment