Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N011_RS02795 Genome accession   NZ_CP159362
Coordinates   542454..544670 (-) Length   738 a.a.
NCBI ID   WP_024694571.1    Uniprot ID   A0AAU8LHW9
Organism   Pseudomonas syringae CC1417     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 537454..549670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N011_RS02765 (N011_02765) murB 538254..539273 (-) 1020 WP_024694569.1 UDP-N-acetylmuramate dehydrogenase -
  N011_RS02770 (N011_02770) kdsB 539308..540072 (-) 765 WP_024685234.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N011_RS02775 (N011_02775) - 540069..540254 (-) 186 WP_024685235.1 Trm112 family protein -
  N011_RS02780 (N011_02780) lpxK 540272..541267 (-) 996 WP_024694570.1 tetraacyldisaccharide 4'-kinase -
  N011_RS02785 (N011_02785) - 541267..541698 (-) 432 WP_024685237.1 biopolymer transporter ExbD -
  N011_RS02790 (N011_02790) exbB 541695..542411 (-) 717 WP_080265964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N011_RS02795 (N011_02795) comA 542454..544670 (-) 2217 WP_024694571.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N011_RS02800 (N011_02800) - 544806..545594 (-) 789 WP_024694572.1 ABC transporter permease -
  N011_RS02805 (N011_02805) - 545591..546523 (-) 933 WP_024685241.1 ABC transporter ATP-binding protein -
  N011_RS02810 (N011_02810) - 546711..547334 (-) 624 WP_024694573.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80217.62 Da        Isoelectric Point: 10.2425

>NTDB_id=1013410 N011_RS02795 WP_024694571.1 542454..544670(-) (comA) [Pseudomonas syringae CC1417]
MRTGMIALALGLLALRFLPALPASWLLLLMPVVALMLLPFRTYPLAFFLFGFTWACVSAQSALNDRLLPRLDGQTLWLQG
KVVGLPSASEGVVRFELAEGLSRRAKLPKLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSIDWQVLQDTGTVHLLVISGQHVSLLAGVMYAL
VSLLVRWGLWPRALPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGLLWPLLLSLNAVLVFEPL
VSLRPGFWLSFAAVGILILIFSGRLGAWGWIQSWTRAQWLIAVGLLPILMMLNLPISISGPLANLVAVPWVSVIVLPLAL
IGTLLLPVPLLGESLLWVAGGALEWLFVFLGWMADQVPAWLPSATPAWVLALSLLGALLVLLPKGVPIRPLGWPLLLLCV
FAPLKPVPAGQVDVLQLDVGQGLAILLRTRHHTLLYDAGPRFGEFDIGQRVVLPAIRKSGVRHLDMMLLSHADADHAGGA
LAVHRALSVGRVLGGDIARLAPALGASRCENGERWEWDGVVFSTWVWEQAPEGNAGSCMLSVDANGERLLLTGDVDAEAE
QAAIDSGFDLRAHWLQAPHHGSRSSSSKPFLRAVMPTGVLISRGRNNAFGHPHPLVMARYKWFGSASYDSAELGAIRLQL
GTFGSPEAQRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1013410 N011_RS02795 WP_024694571.1 542454..544670(-) (comA) [Pseudomonas syringae CC1417]
ATGCGCACAGGGATGATCGCGCTGGCTTTGGGCCTGTTGGCCTTGCGTTTTCTGCCTGCCTTGCCTGCCTCCTGGCTGCT
ACTGCTGATGCCCGTCGTGGCGTTGATGCTGCTGCCGTTTCGCACCTACCCATTGGCTTTCTTTCTGTTCGGATTCACCT
GGGCTTGCGTCTCGGCGCAGTCGGCGCTGAATGATCGCTTGTTGCCCCGTCTCGACGGACAAACGCTGTGGCTGCAGGGC
AAAGTGGTCGGGCTGCCGAGCGCGTCTGAAGGTGTGGTGCGTTTCGAACTGGCAGAAGGCCTGTCACGTCGTGCGAAGCT
GCCCAAACTGATGCGCATTGCCTGGTATGGCGGCCCCGAGGTGCGCAGTGGCGAGCGTTGGCGGCTGGCAGTAAAACTCA
AGCGGCCGGGCGGGCTGGTGAATCCTGATGCGTTCGATTACGAAGCCTGGCTGCTGGCTCAGCGTATCGGGGCGACCGGC
ACGGTCGTGGACGGTCAGTTGCTGGCGCCGGCTCGTGCAGCCTGGCGTGATGCCATACGCCAGCGCTTGCTGGCCGTTGA
TGCACAGGGGCGAGAAGGGGGGCTGGCGGCGCTGGTTCTGGGTGACGGCTCCGGGCTGTCAAGCATCGACTGGCAGGTGC
TGCAGGATACCGGCACCGTGCACCTGTTGGTGATCTCCGGTCAGCACGTCAGCTTACTGGCCGGGGTGATGTATGCGCTG
GTGAGTCTGCTGGTACGTTGGGGGCTGTGGCCGCGCGCGCTGCCCTGGTTGCCGTGGGCCTGTGGTCTGGCATTCGCTTC
GGCGCTTGGTTATGGACTGCTGGCCGGCTTCGATGTGCCGGTACGGCGTGCCTGCGTGATGGTGGGTCTGGTGTTGTTGT
GGCGCTTGCGCTTTCGGCATTTGGGCCTGCTTTGGCCGCTGTTGCTGTCGCTCAACGCGGTGCTGGTTTTTGAGCCCTTG
GTGAGTCTGCGTCCCGGTTTCTGGCTGTCGTTTGCGGCAGTGGGGATTCTGATTCTTATCTTCAGTGGTCGCCTTGGCGC
CTGGGGCTGGATTCAGAGCTGGACGCGAGCCCAGTGGCTGATTGCCGTGGGCCTGCTTCCAATCCTGATGATGTTGAACC
TGCCGATCAGTATCAGCGGTCCGCTCGCCAACCTGGTCGCGGTGCCATGGGTCAGTGTGATCGTTCTGCCTCTGGCACTG
ATCGGCACCCTGTTGCTGCCTGTTCCATTGCTGGGCGAAAGCCTTTTGTGGGTGGCCGGTGGAGCGCTGGAGTGGCTGTT
CGTGTTTTTGGGCTGGATGGCTGATCAGGTGCCTGCGTGGCTGCCCAGCGCAACGCCCGCCTGGGTGCTGGCACTGAGTC
TGCTCGGTGCTTTGCTGGTCTTGTTGCCCAAGGGCGTGCCAATCAGGCCGCTGGGCTGGCCGCTTCTCTTGTTATGTGTA
TTTGCACCGCTCAAGCCGGTACCCGCCGGGCAGGTCGATGTCCTGCAACTGGATGTCGGTCAGGGTCTGGCAATACTGCT
TCGCACGCGTCATCACACCTTGCTTTACGACGCAGGGCCGCGTTTTGGCGAGTTCGATATCGGCCAGCGCGTGGTCTTGC
CCGCCATCCGCAAGAGCGGGGTACGGCATCTGGACATGATGCTGCTCAGTCATGCCGACGCGGACCATGCCGGCGGCGCG
TTGGCTGTCCACAGGGCATTGTCGGTCGGGCGTGTGCTCGGGGGGGACATTGCCCGGCTTGCGCCTGCACTCGGTGCCAG
TCGATGCGAAAACGGTGAGCGTTGGGAATGGGATGGTGTGGTCTTTTCAACCTGGGTCTGGGAGCAGGCACCCGAAGGCA
ACGCGGGGTCCTGCATGCTGAGTGTCGACGCCAATGGTGAGCGATTGTTGTTGACCGGCGACGTTGATGCCGAAGCCGAA
CAGGCGGCTATCGACAGCGGGTTCGATCTGCGCGCGCACTGGTTGCAGGCGCCGCATCATGGCAGCCGAAGCTCGTCTTC
CAAGCCGTTTTTGAGGGCTGTCATGCCAACCGGCGTCCTGATCTCGCGCGGCCGCAACAACGCGTTCGGCCACCCGCATC
CGCTCGTCATGGCGCGTTATAAATGGTTTGGCAGTGCCAGCTACGACAGCGCCGAGCTGGGCGCAATCCGGCTGCAACTG
GGAACATTCGGCTCGCCTGAGGCACAACGTGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-673)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.011

97.019

0.602
  comA Ralstonia pseudosolanacearum GMI1000

32.151

100

0.369

Multiple sequence alignment