Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N011_RS02790 Genome accession   NZ_CP159362
Coordinates   541695..542411 (-) Length   238 a.a.
NCBI ID   WP_080265964.1    Uniprot ID   -
Organism   Pseudomonas syringae CC1417     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536695..547411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N011_RS02765 (N011_02765) murB 538254..539273 (-) 1020 WP_024694569.1 UDP-N-acetylmuramate dehydrogenase -
  N011_RS02770 (N011_02770) kdsB 539308..540072 (-) 765 WP_024685234.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N011_RS02775 (N011_02775) - 540069..540254 (-) 186 WP_024685235.1 Trm112 family protein -
  N011_RS02780 (N011_02780) lpxK 540272..541267 (-) 996 WP_024694570.1 tetraacyldisaccharide 4'-kinase -
  N011_RS02785 (N011_02785) - 541267..541698 (-) 432 WP_024685237.1 biopolymer transporter ExbD -
  N011_RS02790 (N011_02790) exbB 541695..542411 (-) 717 WP_080265964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N011_RS02795 (N011_02795) comA 542454..544670 (-) 2217 WP_024694571.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N011_RS02800 (N011_02800) - 544806..545594 (-) 789 WP_024694572.1 ABC transporter permease -
  N011_RS02805 (N011_02805) - 545591..546523 (-) 933 WP_024685241.1 ABC transporter ATP-binding protein -
  N011_RS02810 (N011_02810) - 546711..547334 (-) 624 WP_024694573.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25815.33 Da        Isoelectric Point: 8.5304

>NTDB_id=1013409 N011_RS02790 WP_080265964.1 541695..542411(-) (exbB) [Pseudomonas syringae CC1417]
MVEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEHKLDNDKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDARVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1013409 N011_RS02790 WP_080265964.1 541695..542411(-) (exbB) [Pseudomonas syringae CC1417]
ATGGTAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAGCGTCTCTGGACGCTGCGCGCCAGCCGTATCACGCCGC
CGCACCTGCTGGGGCAGGTCTGGCAGTGGATTCAGGAACATAAGCTCGATAACGACAAGCTCAAGCAACTGCGCGCCGAT
TCGCCTTTGGGTGAAATCCTCGCGGCGGGCCTTGCCAACTCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCACGACCTGGAACGTTACCTGAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGTTGTTGG
GGCTGCTGGGCACCGTGCTGGGGATGATCGACATCTTCGGGTCGTTCAACAGTTCGGGTGCGACCGCCAACGCCGGTGTG
CTGGCCGGCGGTATTTCCAAGGCGCTGATCTGTACCGCCTCTGGCCTTATCGTTGCGATTCCGGCCATCTTCTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTCGAGGTGGTGCAGGGTG
ACCGGGATGTCGATTTGATCGATGCCCGGGTTGACCTCAAATCCCTGGCCAAGGCGGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.583

86.555

0.697

Multiple sequence alignment