Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABVJ71_RS11485 Genome accession   NZ_CP159358
Coordinates   2214474..2215016 (+) Length   180 a.a.
NCBI ID   WP_353854122.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2209474..2220016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS11460 - 2210478..2210888 (-) 411 WP_353854117.1 hypothetical protein -
  ABVJ71_RS11465 - 2210907..2212226 (-) 1320 WP_353854118.1 hydrolase -
  ABVJ71_RS11470 - 2212520..2212726 (+) 207 WP_353854119.1 DUF951 domain-containing protein -
  ABVJ71_RS11475 ychF 2212943..2214043 (+) 1101 WP_353854120.1 redox-regulated ATPase YchF -
  ABVJ71_RS11480 rpsF 2214152..2214439 (+) 288 WP_353854121.1 30S ribosomal protein S6 -
  ABVJ71_RS11485 ssbA 2214474..2215016 (+) 543 WP_353854122.1 single-stranded DNA-binding protein SsbA Machinery gene
  ABVJ71_RS11490 rpsR 2215056..2215295 (+) 240 WP_353854123.1 30S ribosomal protein S18 -
  ABVJ71_RS11495 - 2215557..2216507 (+) 951 WP_353854124.1 ring-cleaving dioxygenase -
  ABVJ71_RS11500 - 2216504..2217112 (+) 609 WP_353854125.1 alpha/beta hydrolase -
  ABVJ71_RS11505 wrbA 2217185..2217799 (+) 615 WP_353856644.1 NAD(P)H:quinone oxidoreductase -
  ABVJ71_RS11510 - 2217833..2218039 (+) 207 WP_353854126.1 hypothetical protein -
  ABVJ71_RS11515 - 2218300..2219226 (-) 927 WP_353854127.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19662.21 Da        Isoelectric Point: 4.6109

>NTDB_id=1013390 ABVJ71_RS11485 WP_353854122.1 2214474..2215016(+) (ssbA) [Bacillus sp. Bos-x628]
MLNRVVLVGRLTKDPELRYTPNGAAVTTFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1013390 ABVJ71_RS11485 WP_353854122.1 2214474..2215016(+) (ssbA) [Bacillus sp. Bos-x628]
ATGCTAAACCGTGTTGTTTTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAAC
CACGTTTACTCTAGCTGTAAATCGTACCTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCTGAGAACGTGGCTAATTTCCTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAAACAAGA
AACTATGAAAATCAGCAAGGACAACGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85

100

0.85
  ssb Latilactobacillus sakei subsp. sakei 23K

58.889

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

58.889

0.372
  ssb Glaesserella parasuis strain SC1401

35.106

100

0.367

Multiple sequence alignment