Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ABQ274_RS00545 Genome accession   NZ_CP159281
Coordinates   93636..94625 (+) Length   329 a.a.
NCBI ID   WP_353727344.1    Uniprot ID   -
Organism   Lactococcus lactis strain FNZ339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 88636..99625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS00525 (ABQ274_00525) - 88713..89549 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  ABQ274_RS00530 (ABQ274_00530) - 89856..91277 (+) 1422 WP_003130403.1 solute carrier family 23 protein -
  ABQ274_RS00535 (ABQ274_00535) - 91491..92315 (+) 825 WP_023164441.1 alpha/beta hydrolase -
  ABQ274_RS00540 (ABQ274_00540) - 92477..93562 (+) 1086 WP_023164440.1 YdcF family protein -
  ABQ274_RS00545 (ABQ274_00545) coiA 93636..94625 (+) 990 WP_353727344.1 competence protein CoiA Machinery gene
  ABQ274_RS00550 (ABQ274_00550) pepF 94688..96493 (+) 1806 WP_277812453.1 oligoendopeptidase F Regulator
  ABQ274_RS00555 (ABQ274_00555) - 96496..97179 (+) 684 WP_023164438.1 O-methyltransferase -
  ABQ274_RS00560 (ABQ274_00560) - 97333..98259 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39454.03 Da        Isoelectric Point: 8.2893

>NTDB_id=1013038 ABQ274_RS00545 WP_353727344.1 93636..94625(+) (coiA) [Lactococcus lactis strain FNZ339]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=1013038 ABQ274_RS00545 WP_353727344.1 93636..94625(+) (coiA) [Lactococcus lactis strain FNZ339]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGGTTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.153

99.088

0.745
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426

Multiple sequence alignment