Detailed information NTG1013002

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: N027_RS02850
• Genome accession: NZ_CP159278
• Coordinates: 588815..589384 (+)
• Length: 189 a.a.
• NCBI ID: WP_003426596.1
• Uniprot ID: A0A0K8M6E3
• Organism: Pseudomonas syringae USA007
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	590334..600138	588815..589384	flank	950

Gene organization within MGE regions

Location: 588815..600138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N027_RS02850 (N027_02850)	ssb	588815..589384 (+)	570	WP_003426596.1	single-stranded DNA-binding protein	Machinery gene
N027_RS02855 (N027_02855)	-	589482..590309 (-)	828	WP_024658746.1	class I SAM-dependent methyltransferase	-
N027_RS02860 (N027_02860)	-	590334..591230 (-)	897	WP_024658747.1	crotonase/enoyl-CoA hydratase family protein	-
N027_RS02865 (N027_02865)	-	591559..591858 (-)	300	WP_024658748.1	hypothetical protein	-
N027_RS02870 (N027_02870)	-	591981..592724 (-)	744	WP_005614319.1	inositol monophosphatase family protein	-
N027_RS02875 (N027_02875)	-	592721..593482 (-)	762	WP_024658749.1	glycerophosphoryl diester phosphodiesterase	-
N027_RS02880 (N027_02880)	-	593489..594595 (-)	1107	WP_024658750.1	ABC transporter ATP-binding protein	-
N027_RS02885 (N027_02885)	-	594592..595485 (-)	894	WP_024658751.1	ABC transporter permease subunit	-
N027_RS02890 (N027_02890)	-	595482..596375 (-)	894	WP_024658752.1	carbohydrate ABC transporter permease	-
N027_RS02895 (N027_02895)	-	596372..597823 (-)	1452	WP_024658753.1	extracellular solute-binding protein	-
N027_RS02900 (N027_02900)	-	597989..599119 (+)	1131	WP_024658754.1	ROK family transcriptional regulator	-
N027_RS02905 (N027_02905)	-	599147..599680 (-)	534	Protein_569	hypothetical protein	-
N027_RS02910 (N027_02910)	-	599896..600138 (+)	243	WP_024658756.1	hypothetical protein	-

Sequence

Protein

• Length: 189 a.a.
• Molecular weight: 20974.10 Da
• Isoelectric Point: 5.9404

>NTDB_id=1013002 N027_RS02850 WP_003426596.1 588815..589384(+) (ssb) [Pseudomonas syringae USA007]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF

Nucleotide

• Length: 570 bp

>NTDB_id=1013002 N027_RS02850 WP_003426596.1 588815..589384(+) (ssb) [Pseudomonas syringae USA007]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAATGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCACAGCAGTCCGCACCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCTCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (5-107)

3D structure

• AlphaFold DB: A0A0K8M6E3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	55.208	100	0.561
ssb	Glaesserella parasuis strain SC1401	47.368	100	0.476
ssb	Neisseria meningitidis MC58	44.681	99.471	0.444
ssb	Neisseria gonorrhoeae MS11	44.681	99.471	0.444