Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABVN22_RS20945 Genome accession   NZ_CP159260
Coordinates   4693054..4695279 (-) Length   741 a.a.
NCBI ID   WP_105698564.1    Uniprot ID   A0A2S9EE92
Organism   Pseudomonas poae strain MYb114     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4688054..4700279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN22_RS20910 (ABVN22_20910) murB 4688434..4689453 (-) 1020 WP_105698559.1 UDP-N-acetylmuramate dehydrogenase -
  ABVN22_RS20915 (ABVN22_20915) - 4689450..4689914 (-) 465 WP_105698560.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN22_RS20920 (ABVN22_20920) kdsB 4689914..4690678 (-) 765 WP_105698561.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN22_RS20925 (ABVN22_20925) - 4690675..4690860 (-) 186 WP_038994143.1 Trm112 family protein -
  ABVN22_RS20930 (ABVN22_20930) lpxK 4690885..4691895 (-) 1011 WP_105698562.1 tetraacyldisaccharide 4'-kinase -
  ABVN22_RS20935 (ABVN22_20935) - 4691895..4692323 (-) 429 WP_105698563.1 biopolymer transporter ExbD -
  ABVN22_RS20940 (ABVN22_20940) exbB 4692320..4692955 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN22_RS20945 (ABVN22_20945) comA 4693054..4695279 (-) 2226 WP_105698564.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN22_RS20950 (ABVN22_20950) - 4695415..4695930 (+) 516 WP_105698565.1 DUF2062 domain-containing protein -
  ABVN22_RS20955 (ABVN22_20955) - 4695934..4697304 (-) 1371 WP_105698566.1 sensor histidine kinase -
  ABVN22_RS20960 (ABVN22_20960) - 4697291..4698019 (-) 729 WP_105698567.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80713.70 Da        Isoelectric Point: 10.7779

>NTDB_id=1012995 ABVN22_RS20945 WP_105698564.1 4693054..4695279(-) (comA) [Pseudomonas poae strain MYb114]
MKTGMFALALGLLVLRWLPALPSTGWLLVMLVLALMLLPFRTYPLAFFLFGLSWACISAQWALDDRLRLALDGQTRWIEG
RVIGLPQQTGEGVRFELADSRARNARLPKRIRVSWRGGPPVRSGERWRLAVTLKRPSGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARHAWRDAVRQRLLAVDAQGREAGLAALVIGDGSGLTGEDWRVLQDTGTVHLMVISGQHIGMLAGLVYAL
IAGLARYGCWPRTWPWLPWACGLAFTAALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLLLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGSWNVWQVWTRPQGLIAMGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
LGTVLLPLPWIGESLLWLAGGALDGLFRGLAWLAGYVPAWVPAEVPLGFWLISLTGAVLLLLPKGVPFRVLGWPMLLLAV
FPPREPVPDGQVDVVQLDVGQGQSLLLRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKFGVGALDVMLLSHADADHAGGA
AAVANGLPVKRVVGGETKKLPAFLGTEPCVSGERWVWDGVSFELWQWPDATNGNAKSCVLQVQANGERLLLTGDIDRAAE
QAFLASALAVPTDWLQAPHHGSRSSSSWRFLEGLVPKSVLISRGRGNAFGHPHPQVTERYQALGSQVYDSAEHGAVRFRL
GAFSSPVVARAQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1012995 ABVN22_RS20945 WP_105698564.1 4693054..4695279(-) (comA) [Pseudomonas poae strain MYb114]
ATGAAGACAGGGATGTTCGCGCTGGCGCTGGGCCTGTTGGTGCTGCGTTGGTTGCCCGCGCTGCCGTCGACCGGGTGGCT
TCTGGTCATGCTGGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCATTTTTCCTGTTCGGGCTGAGTT
GGGCCTGCATCAGTGCGCAATGGGCGCTGGATGACCGCTTACGGCTGGCGCTGGACGGCCAGACGCGCTGGATCGAAGGA
CGGGTCATCGGCTTGCCGCAACAGACGGGAGAGGGCGTGCGGTTTGAACTGGCCGACAGCCGTGCGCGAAATGCGCGGTT
ACCCAAGCGGATTCGGGTGTCTTGGCGCGGCGGGCCACCGGTGCGCAGTGGTGAACGCTGGCGCTTGGCTGTCACGCTGA
AGCGGCCATCCGGGCTACTGAATTTTCACGGGTTCGATCAGGAGGCCTGGTTGTTGGCCCAGCGCATTGGGGCGACCGGC
TCAGTCAAAGATGGCGAGCGCCTGGCACCGGCACGCCATGCCTGGCGCGACGCGGTGCGTCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGTCGCGAGGCGGGCCTGGCTGCATTGGTCATCGGCGATGGTTCCGGATTGACCGGCGAAGATTGGCGGGTGT
TACAGGACACTGGCACCGTTCATCTAATGGTAATTTCTGGCCAGCACATCGGCATGTTGGCGGGCCTTGTCTACGCCCTG
ATCGCCGGGCTGGCGCGGTATGGTTGCTGGCCCCGAACCTGGCCTTGGTTGCCTTGGGCGTGCGGCCTGGCATTCACCGC
GGCATTGGCATACGGCCTGTTGGCGGGTTTCGGCGTGCCGGTACAGCGCGCCTGCGTGATGGTGGGACTGGTGCTGCTGT
GGCGTCTGCGTTTTCGCCATCTTGGGCTCTGGTGGCCCTTGCTGTTGGCGCTAAATGGGGTATTGCTCCTTGAACCATTA
GCCAGCTTGCAACCGGGATTCTGGCTGTCGTTCGCCGCGGTGGCGGTGCTGATCCTGGCATTTGGCGGACGGCTGGGGTC
GTGGAACGTGTGGCAGGTATGGACGCGGCCGCAAGGGTTGATCGCCATGGGTCTGTTTCCGGTGTTGCTGGTGTTGGGGT
TGCCCATCAGCCTCAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTATTGCCGCTGGCATTA
TTGGGTACGGTCTTGTTGCCGCTGCCGTGGATCGGCGAGAGCCTGTTGTGGCTGGCGGGTGGTGCGCTGGATGGGTTGTT
TCGGGGCTTGGCATGGCTTGCTGGGTATGTGCCTGCCTGGGTTCCGGCCGAAGTGCCGCTGGGGTTTTGGTTGATAAGCC
TGACCGGTGCCGTGCTCCTGTTACTGCCTAAAGGCGTGCCATTTCGGGTGTTGGGTTGGCCGATGCTGTTGCTGGCCGTG
TTCCCCCCGCGAGAGCCGGTGCCCGACGGTCAGGTCGACGTGGTGCAGTTGGATGTCGGGCAGGGTCAGTCGCTGCTGTT
GCGTACCCGCCATCACACGTTGCTCTACGATGCCGGTCCGCGCTCTGGGACTTTTGATTTGGGGGCGCGGGTGGTGTTGC
CGTCGTTGCGAAAATTTGGCGTTGGGGCGTTGGATGTGATGCTACTTAGCCACGCCGATGCGGATCATGCGGGTGGCGCT
GCGGCAGTTGCCAATGGATTACCGGTCAAACGCGTCGTTGGTGGGGAAACCAAGAAGTTACCGGCATTTCTGGGTACCGA
GCCTTGTGTGAGCGGCGAGCGCTGGGTGTGGGACGGCGTGTCATTCGAACTTTGGCAGTGGCCGGACGCTACCAATGGCA
ACGCAAAGTCCTGCGTATTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGTTGACGGGCGACATCGACCGTGCCGCCGAA
CAAGCATTCCTCGCGTCTGCACTGGCGGTGCCGACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCCTC
ATGGCGTTTTCTAGAAGGGCTGGTGCCCAAGTCGGTGCTGATTTCCCGGGGGCGTGGCAATGCGTTTGGCCATCCTCATC
CGCAGGTCACGGAGCGCTACCAGGCGTTGGGCAGCCAGGTGTACGACAGTGCCGAACACGGTGCGGTGCGTTTTCGACTG
GGTGCGTTCTCATCGCCGGTGGTTGCGCGCGCTCAACGTCGGTTCTGGCGTGAGCGGTTACCTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S9EE92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.972

97.166

0.592
  comA Ralstonia pseudosolanacearum GMI1000

36.01

100

0.387

Multiple sequence alignment