Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABVN22_RS20940 Genome accession   NZ_CP159260
Coordinates   4692320..4692955 (-) Length   211 a.a.
NCBI ID   WP_058425437.1    Uniprot ID   A0A1H0L153
Organism   Pseudomonas poae strain MYb114     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4687320..4697955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN22_RS20905 (ABVN22_20905) - 4687693..4688364 (+) 672 WP_105698558.1 Bax inhibitor-1/YccA family protein -
  ABVN22_RS20910 (ABVN22_20910) murB 4688434..4689453 (-) 1020 WP_105698559.1 UDP-N-acetylmuramate dehydrogenase -
  ABVN22_RS20915 (ABVN22_20915) - 4689450..4689914 (-) 465 WP_105698560.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN22_RS20920 (ABVN22_20920) kdsB 4689914..4690678 (-) 765 WP_105698561.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN22_RS20925 (ABVN22_20925) - 4690675..4690860 (-) 186 WP_038994143.1 Trm112 family protein -
  ABVN22_RS20930 (ABVN22_20930) lpxK 4690885..4691895 (-) 1011 WP_105698562.1 tetraacyldisaccharide 4'-kinase -
  ABVN22_RS20935 (ABVN22_20935) - 4691895..4692323 (-) 429 WP_105698563.1 biopolymer transporter ExbD -
  ABVN22_RS20940 (ABVN22_20940) exbB 4692320..4692955 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN22_RS20945 (ABVN22_20945) comA 4693054..4695279 (-) 2226 WP_105698564.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN22_RS20950 (ABVN22_20950) - 4695415..4695930 (+) 516 WP_105698565.1 DUF2062 domain-containing protein -
  ABVN22_RS20955 (ABVN22_20955) - 4695934..4697304 (-) 1371 WP_105698566.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.03 Da        Isoelectric Point: 7.3615

>NTDB_id=1012994 ABVN22_RS20940 WP_058425437.1 4692320..4692955(-) (exbB) [Pseudomonas poae strain MYb114]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1012994 ABVN22_RS20940 WP_058425437.1 4692320..4692955(-) (exbB) [Pseudomonas poae strain MYb114]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAAGAGAAACTCAAGGAGCTGCGCGCCAACTCACCGCTGGGTGAAATCCTCGCCGCAGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCTGCCCGGGTCATCCATGAGCTGGAGCGCTATAT
CAACGCCCTCGGCACCATCGCGGCCATGGCGCCATTGCTGGGTTTGCTCGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCTCGGGTATGACCACCAACGCCGCCGTGCTGGCGGGTGGTATTTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGTATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0L153

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment