Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABVN19_RS03705 Genome accession   NZ_CP159259
Coordinates   787401..789623 (+) Length   740 a.a.
NCBI ID   WP_105642798.1    Uniprot ID   -
Organism   Pseudomonas vranovensis strain MYb188     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 782401..794623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN19_RS03685 (ABVN19_03685) - 784277..784900 (+) 624 WP_028943762.1 glutathione S-transferase -
  ABVN19_RS03690 (ABVN19_03690) - 785039..785971 (+) 933 WP_028943763.1 ABC transporter ATP-binding protein -
  ABVN19_RS03695 (ABVN19_03695) - 785968..786747 (+) 780 WP_028943764.1 ABC transporter permease -
  ABVN19_RS03700 (ABVN19_03700) - 786715..787257 (-) 543 WP_028943765.1 DUF2062 domain-containing protein -
  ABVN19_RS03705 (ABVN19_03705) comA 787401..789623 (+) 2223 WP_105642798.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN19_RS03710 (ABVN19_03710) exbB 789694..790329 (+) 636 WP_167332113.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN19_RS03715 (ABVN19_03715) - 790326..790757 (+) 432 WP_028943768.1 biopolymer transporter ExbD -
  ABVN19_RS03720 (ABVN19_03720) lpxK 790757..791764 (+) 1008 WP_028943769.1 tetraacyldisaccharide 4'-kinase -
  ABVN19_RS03725 (ABVN19_03725) - 791803..791988 (+) 186 WP_011532874.1 Trm112 family protein -
  ABVN19_RS03730 (ABVN19_03730) kdsB 791985..792749 (+) 765 WP_028943770.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN19_RS03735 (ABVN19_03735) - 792749..793213 (+) 465 WP_028943771.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN19_RS03740 (ABVN19_03740) murB 793210..794229 (+) 1020 WP_105642799.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80462.41 Da        Isoelectric Point: 9.1691

>NTDB_id=1012955 ABVN19_RS03705 WP_105642798.1 787401..789623(+) (comA) [Pseudomonas vranovensis strain MYb188]
MRTGMLALALGLLCLRVLPAVPSVGIVAMMALIGLCCLPWRARLLGLFLLGLSWACVSAQQALDDRLAPALDGRTVWLEG
RVVGLPEQGGRVVRFELEEAHSRRAELPRRLQLSWFGGPPVFSGERWRLAVSLKRPHGLLNPHGPDREATLLARRVGATG
SVKAGERLALAEAAWRDGVRQRLLSVDAQGREAELVALVLGDGKGLARENWDVLQATGTVHLLVISGQHIGLLAGLVYGL
IAALARLGWWPQRLPWLPWACGLGFAAALGYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALVAVLLWEPL
ASLLPGFWLSFAAVAVLTLTFSGRLGAWNRWLAWGRAQWLIALGLLPVLLALELPVSVTAPLANVFAVPWISLAVLPLAL
LGTLLLPVPLVGESLLWMAGGLLDGLFRLLAALADWHPAWVPEPLSWFVWGLVCTGALLLLLPRGVPMRVLGWPLLLLAV
FAPRERVPHGQVEVWQLDVGQGLAFVLRTRDHAMLYDAGPAMGDQDLGERIVLPTLRKLGVNALDLMLLSHADADHAGGA
PAVLRGLPVLRVVAGGSARLPAVLQAQPCDNGQHWQWDGVSFSLWQWPGARDSNQDSCVLLVEASGERLLLTGDLDAPGE
RAWAHDWQATRVDWLQSPHHGSRSSSSQSLLSTTAPRGALISRGRYNAFGHPHAEVMERYRTNGIEVFDSAVRGAVRLRL
GDFGEPLGMRDPPRFWRDPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1012955 ABVN19_RS03705 WP_105642798.1 787401..789623(+) (comA) [Pseudomonas vranovensis strain MYb188]
ATGCGCACAGGGATGTTAGCGCTTGCTCTGGGCCTGTTGTGCCTCAGGGTTCTACCGGCTGTGCCATCGGTCGGAATAGT
GGCCATGATGGCCCTGATCGGGCTTTGTTGCCTGCCTTGGCGGGCTCGCCTACTGGGCTTGTTCCTGCTGGGATTGAGCT
GGGCGTGTGTTTCGGCGCAGCAGGCGCTGGATGATCGCCTGGCACCGGCACTTGATGGTCGCACTGTGTGGCTGGAGGGC
AGGGTGGTCGGGTTGCCCGAGCAGGGTGGGCGCGTGGTGCGGTTCGAGCTTGAAGAGGCTCACTCGCGGCGCGCCGAGTT
GCCACGTCGGCTGCAACTGAGCTGGTTTGGCGGGCCACCGGTATTCAGTGGCGAGCGTTGGCGCCTGGCGGTCAGCCTCA
AGCGCCCCCACGGCTTGCTCAACCCTCATGGTCCGGATCGCGAAGCGACCTTGTTGGCTCGACGCGTCGGCGCTACCGGC
AGTGTCAAGGCCGGTGAGCGCCTGGCGCTTGCTGAAGCCGCCTGGCGCGATGGCGTGCGCCAGCGCTTGCTGAGTGTCGA
TGCCCAGGGGCGTGAGGCCGAGCTGGTGGCGCTGGTGCTAGGCGATGGCAAGGGCCTTGCCCGGGAAAACTGGGATGTAC
TGCAGGCCACTGGCACGGTTCACTTGCTGGTGATTTCCGGTCAGCACATCGGCCTGCTGGCCGGCTTGGTCTATGGACTG
ATCGCCGCACTGGCCCGATTGGGTTGGTGGCCTCAACGCCTGCCCTGGTTGCCTTGGGCGTGCGGCCTGGGGTTTGCCGC
TGCCCTGGGGTACGGGTTGCTGGCCGGCTTCCAGGTGCCGGTGCAGCGTGCCTGCATGATGCTTGCGATGGTGCTGCTAT
GGCGCTTGCGCTTTCGCCATCTCGGCGTAGGCCTGCCGTTATTGCTGGCGCTGGTTGCGGTGTTGCTGTGGGAGCCACTG
GCCAGTTTGCTGCCTGGGTTCTGGTTGTCGTTTGCCGCTGTTGCGGTACTGACCCTGACCTTCAGTGGCCGCCTGGGCGC
CTGGAACCGCTGGTTGGCCTGGGGGCGGGCGCAGTGGCTGATTGCACTGGGGCTTCTGCCGGTGTTGTTGGCGCTGGAGC
TGCCGGTCAGTGTGACGGCGCCCTTGGCCAATGTGTTTGCCGTGCCCTGGATCAGCCTGGCGGTGCTGCCCTTGGCGCTA
CTGGGGACGTTGCTGTTACCCGTGCCGTTGGTGGGCGAATCCCTGCTCTGGATGGCCGGCGGCTTGCTCGACGGTTTGTT
TCGACTGCTGGCGGCACTGGCGGACTGGCACCCGGCGTGGGTGCCAGAACCCTTGTCCTGGTTCGTGTGGGGGCTGGTAT
GTACAGGCGCGCTGTTGCTGCTGTTGCCCCGCGGAGTGCCGATGCGGGTGCTGGGCTGGCCACTGCTGCTACTGGCGGTA
TTCGCGCCCAGGGAGCGGGTGCCCCACGGCCAGGTGGAAGTCTGGCAGTTGGATGTCGGCCAGGGGTTGGCCTTTGTCCT
GCGCACCCGCGACCACGCGATGCTGTATGACGCAGGGCCCGCGATGGGAGACCAGGACCTGGGGGAGCGCATCGTGCTGC
CGACATTGCGCAAGCTGGGTGTGAATGCGCTCGATCTCATGCTTCTCAGTCATGCCGATGCCGATCATGCGGGCGGTGCC
CCAGCGGTGCTGCGCGGTCTGCCAGTGCTCAGGGTCGTGGCTGGAGGGTCGGCAAGACTGCCGGCGGTATTGCAGGCGCA
GCCTTGCGACAACGGCCAGCACTGGCAGTGGGATGGAGTGAGCTTTTCGCTCTGGCAGTGGCCAGGCGCTCGTGACAGCA
ACCAGGACTCTTGTGTGCTGTTGGTTGAGGCGAGTGGTGAGCGGTTGTTGCTTACCGGGGACCTGGATGCACCCGGCGAG
CGGGCCTGGGCACATGACTGGCAGGCCACCCGGGTCGACTGGTTGCAGTCTCCGCACCATGGCAGCCGCAGTTCGTCCAG
CCAATCGTTGTTGAGTACCACCGCGCCGCGCGGAGCATTGATCTCCAGGGGGCGCTACAACGCGTTCGGCCATCCCCATG
CCGAGGTCATGGAACGCTACCGAACAAATGGCATCGAAGTCTTCGACAGCGCCGTACGCGGCGCAGTGCGCCTGCGTCTG
GGCGACTTCGGCGAGCCGTTGGGGATGCGTGATCCGCCACGTTTCTGGCGTGACCCCAGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Domain of unknown function (DUF4131) (DUF4131)

(24-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.196

97.162

0.595
  comA Ralstonia pseudosolanacearum GMI1000

35.553

100

0.382

Multiple sequence alignment