Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABVN19_RS03710 Genome accession   NZ_CP159259
Coordinates   789694..790329 (+) Length   211 a.a.
NCBI ID   WP_167332113.1    Uniprot ID   -
Organism   Pseudomonas vranovensis strain MYb188     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784694..795329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN19_RS03690 (ABVN19_03690) - 785039..785971 (+) 933 WP_028943763.1 ABC transporter ATP-binding protein -
  ABVN19_RS03695 (ABVN19_03695) - 785968..786747 (+) 780 WP_028943764.1 ABC transporter permease -
  ABVN19_RS03700 (ABVN19_03700) - 786715..787257 (-) 543 WP_028943765.1 DUF2062 domain-containing protein -
  ABVN19_RS03705 (ABVN19_03705) comA 787401..789623 (+) 2223 WP_105642798.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABVN19_RS03710 (ABVN19_03710) exbB 789694..790329 (+) 636 WP_167332113.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABVN19_RS03715 (ABVN19_03715) - 790326..790757 (+) 432 WP_028943768.1 biopolymer transporter ExbD -
  ABVN19_RS03720 (ABVN19_03720) lpxK 790757..791764 (+) 1008 WP_028943769.1 tetraacyldisaccharide 4'-kinase -
  ABVN19_RS03725 (ABVN19_03725) - 791803..791988 (+) 186 WP_011532874.1 Trm112 family protein -
  ABVN19_RS03730 (ABVN19_03730) kdsB 791985..792749 (+) 765 WP_028943770.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABVN19_RS03735 (ABVN19_03735) - 792749..793213 (+) 465 WP_028943771.1 low molecular weight protein-tyrosine-phosphatase -
  ABVN19_RS03740 (ABVN19_03740) murB 793210..794229 (+) 1020 WP_105642799.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.07 Da        Isoelectric Point: 6.8759

>NTDB_id=1012956 ABVN19_RS03710 WP_167332113.1 789694..790329(+) (exbB) [Pseudomonas vranovensis strain MYb188]
MWELVKSGGWMMLPIILSSIAAMAIIAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTANASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1012956 ABVN19_RS03710 WP_167332113.1 789694..790329(+) (exbB) [Pseudomonas vranovensis strain MYb188]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCATCGC
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGGGTCACCCCACCGCACCTGCTCGGGCAGGTCTGGATGTGGATCAAGGACA
AACAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTCGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCCGTCATGGTCGAGAGATCATGAAAGAGTGCATCGAAGAAGCCGCGGCACGGGTTATCCACGAGCTGGAGCGTTACAT
CAATGCCCTGGGTACCATTGCCGCAATGGCGCCACTGCTCGGTTTGCTCGGTACCGTGCTGGGCATGATCGACATTTTCA
GTTCGTTCATGGGCACCGGCATGACCGCCAACGCCTCCGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCA
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTTGTGCAGGGCGATCGGGATGTCGATCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment