Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABVN21_RS27285 Genome accession   NZ_CP159258
Coordinates   6023361..6024689 (-) Length   442 a.a.
NCBI ID   WP_339555068.1    Uniprot ID   A0AAU8E1T7
Organism   Pseudomonas sp. MYb327     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6018361..6029689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS27270 (ABVN21_27270) - 6018681..6021764 (+) 3084 WP_339555065.1 PilC/PilY family type IV pilus protein -
  ABVN21_RS27275 (ABVN21_27275) - 6021779..6022180 (+) 402 WP_339555066.1 type IV pilin protein -
  ABVN21_RS27280 (ABVN21_27280) thiO 6022239..6023339 (+) 1101 WP_339555067.1 glycine oxidase ThiO -
  ABVN21_RS27285 (ABVN21_27285) pilR 6023361..6024689 (-) 1329 WP_339555068.1 sigma-54 dependent transcriptional regulator Regulator
  ABVN21_RS27290 (ABVN21_27290) pilS 6024692..6026281 (-) 1590 WP_339555069.1 ATP-binding protein Regulator
  ABVN21_RS27295 (ABVN21_27295) - 6026271..6026504 (-) 234 WP_034148242.1 PP0621 family protein -
  ABVN21_RS27300 (ABVN21_27300) - 6026641..6027663 (-) 1023 WP_339555070.1 outer membrane protein assembly factor BamD -
  ABVN21_RS27305 (ABVN21_27305) rluD 6027815..6028777 (+) 963 WP_034148244.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABVN21_RS27310 (ABVN21_27310) pgeF 6028774..6029499 (+) 726 WP_339555071.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49465.77 Da        Isoelectric Point: 6.4115

>NTDB_id=1012949 ABVN21_RS27285 WP_339555068.1 6023361..6024689(-) (pilR) [Pseudomonas sp. MYb327]
MSRQKVLIVDDEPDIRELLEITLGRMKLHTFSARNAGEALALLKREAFDLCLTDMRLPDGTGLELVQHIQQRYPQTPVAM
ITAYGNVETAINALKAGAFDFLSKPVDLARLRELVNSALLLPAPGAAIDRRLLGDSPPMRNLRKQIDKLARSQAPVYISG
ESGSGKELVARLIHERGPRANQRFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADLPLPM
QVKLLRAIQEKAIRSVGGQQEEVVDVRVLCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIETLAGHVLTR
LATDTGQPEAKLQPQALAALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCSAEEGLPDLTQIDNLEVYLE
NVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=1012949 ABVN21_RS27285 WP_339555068.1 6023361..6024689(-) (pilR) [Pseudomonas sp. MYb327]
ATGTCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATTCGCGAACTCCTGGAAATCACCCTGGGACGGATGAA
GCTCCATACCTTCAGTGCCCGAAATGCTGGCGAGGCCTTGGCCCTGCTCAAACGCGAGGCATTCGATTTGTGCCTGACCG
ACATGCGTCTACCCGACGGCACCGGTCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCGCAAACGCCGGTGGCCATG
ATCACCGCCTATGGCAATGTAGAAACAGCGATCAACGCCCTGAAGGCCGGCGCGTTCGACTTCCTGAGCAAACCGGTGGA
CCTCGCCCGCCTGCGGGAGTTGGTCAACAGCGCCCTGCTGCTGCCCGCCCCCGGCGCGGCTATCGATCGTCGTTTGCTTG
GTGACTCACCGCCCATGCGCAATCTGCGCAAACAGATCGACAAGCTGGCGCGCAGCCAGGCGCCGGTTTACATCAGCGGC
GAGTCCGGCAGCGGCAAGGAGTTGGTCGCACGGCTGATTCACGAACGCGGACCGCGTGCCAATCAACGGTTTGTACCGGT
CAACTGTGGCGCGATTCCGTCGGAACTGATGGAGAGCGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGCGGCGCCATCG
AAGACAAACCAGGGCTGTTTCAGGCAGCTCAGGGCGGCACCTTATTTCTTGATGAAGTGGCAGATCTGCCGCTGCCGATG
CAGGTCAAACTGCTGCGAGCCATTCAGGAAAAAGCCATACGCAGCGTCGGCGGGCAACAGGAAGAAGTGGTCGATGTGCG
CGTTCTATGCGCCACCCATAAAGACCTCGATGCCGAAGTCGCCGCTGAACGCTTTCGTCAGGATTTGTACTACCGCTTGA
ACGTGATCGAACTGCGGGTTCCGCCTCTGCGCGAACGTCGCGATGACATCGAGACGCTGGCCGGCCATGTGCTCACGCGG
CTTGCGACTGACACCGGCCAGCCCGAAGCAAAACTCCAGCCCCAAGCCCTCGCAGCACTGAAAAGCTACCGCTTTCCGGG
CAACGTCCGGGAACTGGAAAACATGCTCGAACGGGCGCATACGCTGTGCGAAAACAAACAGATCGAGGCCAGCGACCTGC
GTTTGGCCGAAGGCAACTGTTCTGCAGAAGAGGGATTGCCGGACCTGACGCAGATCGACAATCTGGAGGTCTATCTGGAG
AACGTCGAGCGTCAGCTACTCCTTCAGGCATTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAATCT
TTCATTCAGGTCGATGCGCTACAGGCTGAAGAAATTAGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.753

100

0.783
  pilR Acinetobacter baumannii strain A118

49.565

100

0.516
  luxO Vibrio cholerae strain A1552

36.117

100

0.362

Multiple sequence alignment