Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABVN21_RS27290 Genome accession   NZ_CP159258
Coordinates   6024692..6026281 (-) Length   529 a.a.
NCBI ID   WP_339555069.1    Uniprot ID   A0AAU8E539
Organism   Pseudomonas sp. MYb327     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6019692..6031281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS27275 (ABVN21_27275) - 6021779..6022180 (+) 402 WP_339555066.1 type IV pilin protein -
  ABVN21_RS27280 (ABVN21_27280) thiO 6022239..6023339 (+) 1101 WP_339555067.1 glycine oxidase ThiO -
  ABVN21_RS27285 (ABVN21_27285) pilR 6023361..6024689 (-) 1329 WP_339555068.1 sigma-54 dependent transcriptional regulator Regulator
  ABVN21_RS27290 (ABVN21_27290) pilS 6024692..6026281 (-) 1590 WP_339555069.1 ATP-binding protein Regulator
  ABVN21_RS27295 (ABVN21_27295) - 6026271..6026504 (-) 234 WP_034148242.1 PP0621 family protein -
  ABVN21_RS27300 (ABVN21_27300) - 6026641..6027663 (-) 1023 WP_339555070.1 outer membrane protein assembly factor BamD -
  ABVN21_RS27305 (ABVN21_27305) rluD 6027815..6028777 (+) 963 WP_034148244.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABVN21_RS27310 (ABVN21_27310) pgeF 6028774..6029499 (+) 726 WP_339555071.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58743.81 Da        Isoelectric Point: 7.3885

>NTDB_id=1012950 ABVN21_RS27290 WP_339555069.1 6024692..6026281(-) (pilS) [Pseudomonas sp. MYb327]
MIAETSSPGGKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLVLNTLLVVFVETTRRPTHLF
GLALIDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVGAIGIVGLSFLLSFSHPASPNDYLQVGTLG
ALCFAAALLVQALIRRLEVSETLAEQKASEVVGLETLNALILQRMRTGILVLDEQRRVQLANHSALSLLASERLEGRLID
EHFPALVERLQMWLNNPTLRPQSLKIASSGQELQPSFIALDSSPNHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTLPQRLDLKPWLEQFVAEIRERATDR
QQIHLRIAAGEFKTLMDPNQLHQILDNLIRNAWRHSAQDHDMAQVWLELFIDQTSQLPILEVIDDGPGVAADLQAQLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1012950 ABVN21_RS27290 WP_339555069.1 6024692..6026281(-) (pilS) [Pseudomonas sp. MYb327]
GTGATCGCTGAGACCTCCAGTCCCGGCGGCAAACAGGCCCAGCGACTGCTGCGTCTTTATCATCTCTACCGCTTAAGCGT
CGGCATTACGCTGGTGTTGTTGATTTCCAGCAACATGGACAACCGGCTGCTGACCTCCGCCAATGACGACCTGCTGCGCG
GTGGAAGCTGGTTGTACCTTGTGCTGAATACCCTGCTGGTGGTCTTCGTCGAGACCACCCGCCGACCGACGCATCTGTTC
GGTCTGGCGTTGATCGACGTCCTGCTGTTATGCGGCCTGTTCTACGCCGCTGGCGGCGTAGCCAGCGCCATTGGTAACTT
GCTGATCGTCTCGGTGGCCATCAGCAATACCTTGTTGCGAAGGCGAATCGGCCTGCTGATTGCCGCCGTCGGCGCGATCG
GAATCGTGGGCCTGAGCTTCCTGCTGAGCTTCAGTCATCCCGCCAGTCCTAACGATTATCTGCAAGTCGGCACTCTCGGC
GCCTTGTGTTTTGCCGCGGCCTTGCTGGTGCAGGCCCTGATCCGGCGACTGGAGGTCAGCGAAACCCTGGCCGAACAAAA
GGCCAGTGAAGTCGTCGGCCTGGAAACACTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGATG
AGCAACGACGCGTGCAACTGGCCAACCATAGCGCCTTGAGCCTGCTCGCTAGCGAGCGTCTCGAAGGCCGGCTGATTGAC
GAACACTTCCCGGCCTTGGTGGAACGCCTGCAGATGTGGCTCAACAACCCCACACTGCGCCCGCAGAGCCTGAAAATTGC
CAGCAGCGGCCAGGAACTGCAACCGAGCTTCATTGCGCTGGACTCAAGTCCGAACCACCAGACACTGGTCTTTCTCGAAG
ACCTCGCCCAGATCGCCCAACAGGCGCAGCAACTCAAGCTCGCTGCCCTCGGGCGCCTCACCGCTGGTATCGCCCATGAA
ATCCGCAACCCGCTGGGCGCCATTAGTCATGCCGCGCAGCTATTGCGTGAATCAGAGGAACTGAACGGCGCGGATCGACG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAATTGTCCCGGCGCCAGC
AAACCTTGCCGCAACGACTCGACCTGAAACCTTGGCTGGAACAGTTCGTGGCCGAAATCCGTGAGCGAGCGACTGATCGC
CAGCAGATTCATCTGCGCATCGCTGCGGGAGAATTCAAGACTTTGATGGACCCGAACCAGCTACACCAGATACTCGACAA
CCTCATCCGCAATGCCTGGCGTCACAGCGCCCAGGATCACGACATGGCGCAGGTTTGGCTGGAGTTGTTCATTGATCAGA
CCAGTCAATTGCCAATCCTCGAAGTCATCGACGACGGCCCCGGTGTGGCCGCCGACCTTCAAGCGCAGTTATTCGAGCCG
TTCTTCACCACCAGTCACCAAGGCACTGGCCTGGGGCTGTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGGATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599

Multiple sequence alignment