Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABVN21_RS26300 Genome accession   NZ_CP159258
Coordinates   5810955..5811467 (+) Length   170 a.a.
NCBI ID   WP_339555499.1    Uniprot ID   A0AAU8E5A6
Organism   Pseudomonas sp. MYb327     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5805955..5816467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS26285 (ABVN21_26285) bfr 5805994..5806458 (+) 465 WP_339555502.1 bacterioferritin -
  ABVN21_RS26290 (ABVN21_26290) uvrA 5806523..5809357 (-) 2835 WP_339555501.1 excinuclease ABC subunit UvrA -
  ABVN21_RS26295 (ABVN21_26295) - 5809548..5810945 (+) 1398 WP_339555500.1 MFS transporter -
  ABVN21_RS26300 (ABVN21_26300) ssb 5810955..5811467 (+) 513 WP_339555499.1 single-stranded DNA-binding protein Machinery gene
  ABVN21_RS26305 (ABVN21_26305) - 5811545..5812369 (-) 825 WP_339555498.1 alpha/beta hydrolase -
  ABVN21_RS26310 (ABVN21_26310) - 5812408..5812956 (-) 549 WP_339555497.1 cysteine hydrolase family protein -
  ABVN21_RS26315 (ABVN21_26315) - 5813058..5814050 (+) 993 WP_339555496.1 GlxA family transcriptional regulator -
  ABVN21_RS26320 (ABVN21_26320) - 5814350..5815459 (+) 1110 WP_339555495.1 DUF3182 family protein -
  ABVN21_RS26325 (ABVN21_26325) - 5815449..5816207 (+) 759 WP_339555494.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18883.05 Da        Isoelectric Point: 5.9366

>NTDB_id=1012947 ABVN21_RS26300 WP_339555499.1 5810955..5811467(+) (ssb) [Pseudomonas sp. MYb327]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGEQQGQGGGNYQQSAPRPQAQRPAPQQQPQRPAPQQAAPQPAPD
FDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1012947 ABVN21_RS26300 WP_339555499.1 5810955..5811467(+) (ssb) [Pseudomonas sp. MYb327]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCGAATGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCTGGCGAATACCTTCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGTGGCCGTCCTCAGGGCGAGCAACAGGGCCAGGGCGGTGGTAACTACCAGCAATCCGCTCCGCGTC
CGCAGGCTCAGCGCCCAGCACCGCAACAGCAGCCACAGCGTCCAGCGCCTCAACAAGCCGCGCCGCAACCGGCTCCGGAT
TTCGACAGCTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60

100

0.618
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.529
  ssb Neisseria gonorrhoeae MS11

49.153

100

0.512
  ssb Neisseria meningitidis MC58

48.315

100

0.506

Multiple sequence alignment