Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABVN18_RS02550 Genome accession   NZ_CP159257
Coordinates   537405..537812 (+) Length   135 a.a.
NCBI ID   WP_010564379.1    Uniprot ID   A0A7Y8D5M8
Organism   Pseudomonas canadensis strain MYb395     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 532405..542812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN18_RS02520 (ABVN18_02520) - 532444..533448 (-) 1005 WP_016976042.1 aspartate carbamoyltransferase catalytic subunit -
  ABVN18_RS02525 (ABVN18_02525) pyrR 533473..533979 (-) 507 WP_016976043.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABVN18_RS02530 (ABVN18_02530) ruvX 534155..534592 (-) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  ABVN18_RS02535 (ABVN18_02535) - 534592..535161 (-) 570 WP_028618299.1 YqgE/AlgH family protein -
  ABVN18_RS02540 (ABVN18_02540) - 535229..536134 (-) 906 WP_028618298.1 energy transducer TonB -
  ABVN18_RS02545 (ABVN18_02545) gshB 536212..537165 (-) 954 WP_028618297.1 glutathione synthase -
  ABVN18_RS02550 (ABVN18_02550) pilG 537405..537812 (+) 408 WP_010564379.1 twitching motility response regulator PilG Regulator
  ABVN18_RS02555 (ABVN18_02555) pilH 537859..538224 (+) 366 WP_014720320.1 twitching motility response regulator PilH -
  ABVN18_RS02560 (ABVN18_02560) - 538237..538761 (+) 525 WP_028618296.1 chemotaxis protein CheW -
  ABVN18_RS02565 (ABVN18_02565) - 538758..540809 (+) 2052 WP_028618295.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14906.40 Da        Isoelectric Point: 7.3842

>NTDB_id=1012905 ABVN18_RS02550 WP_010564379.1 537405..537812(+) (pilG) [Pseudomonas canadensis strain MYb395]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1012905 ABVN18_RS02550 WP_010564379.1 537405..537812(+) (pilG) [Pseudomonas canadensis strain MYb395]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGATGATTCGAAGACGATCCGCCGCACCGCTGAAACCTTGTT
GAAGAACGTAGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTTGATCATCACCCGCATA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTTAAG
TCGATCCCGGTGATCATGCTGTCGTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGCGCGATCAAGGCCTACGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8D5M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.4

92.593

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363

Multiple sequence alignment