Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | HPOKI154_RS04310 | Genome accession | NZ_CP006823 |
| Coordinates | 893926..894477 (-) | Length | 183 a.a. |
| NCBI ID | WP_025222949.1 | Uniprot ID | - |
| Organism | Helicobacter pylori oki154 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 888926..899477
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI154_RS04285 (HPOKI154_04470) | ruvC | 889408..889881 (-) | 474 | WP_001221180.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HPOKI154_RS04290 (HPOKI154_04475) | - | 890013..890744 (+) | 732 | WP_025222947.1 | NYN domain-containing protein | - |
| HPOKI154_RS04300 (HPOKI154_04485) | - | 891266..893762 (-) | 2497 | Protein_847 | DUF3519 domain-containing protein | - |
| HPOKI154_RS04310 (HPOKI154_04490) | ruvA | 893926..894477 (-) | 552 | WP_025222949.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| HPOKI154_RS04315 (HPOKI154_04495) | - | 894502..896346 (-) | 1845 | WP_025222950.1 | FapA family protein | - |
| HPOKI154_RS04320 (HPOKI154_04500) | murJ | 896439..897899 (+) | 1461 | WP_025366902.1 | murein biosynthesis integral membrane protein MurJ | - |
| HPOKI154_RS04325 (HPOKI154_04505) | cysS | 897900..899297 (+) | 1398 | WP_025313940.1 | cysteine--tRNA ligase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20125.70 Da Isoelectric Point: 9.4305
>NTDB_id=101274 HPOKI154_RS04310 WP_025222949.1 893926..894477(-) (ruvA) [Helicobacter pylori oki154]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS
Nucleotide
Download Length: 552 bp
>NTDB_id=101274 HPOKI154_RS04310 WP_025222949.1 893926..894477(-) (ruvA) [Helicobacter pylori oki154]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAGGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGTTCTTAA
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAGGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Helicobacter pylori 26695 |
95.082 |
100 |
0.951 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
32.836 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae TIGR4 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae R6 |
33.846 |
100 |
0.361 |
| ruvA | Streptococcus pneumoniae D39 |
33.846 |
100 |
0.361 |