Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABU981_RS15875 | Genome accession | NZ_CP159146 |
| Coordinates | 3492897..3493427 (+) | Length | 176 a.a. |
| NCBI ID | WP_161668558.1 | Uniprot ID | - |
| Organism | Proteus mirabilis strain 10035004-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3454355..3501675 | 3492897..3493427 | within | 0 |
Gene organization within MGE regions
Location: 3454355..3501675
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABU981_RS15580 (ABU981_15580) | - | 3454355..3454546 (+) | 192 | WP_143475534.1 | DNA polymerase III subunit theta | - |
| ABU981_RS15585 (ABU981_15585) | - | 3454576..3456945 (-) | 2370 | WP_143475536.1 | SGNH/GDSL hydrolase family protein | - |
| ABU981_RS15590 (ABU981_15590) | - | 3457003..3459471 (-) | 2469 | WP_143475537.1 | host specificity factor TipJ family phage tail protein | - |
| ABU981_RS15595 (ABU981_15595) | - | 3459458..3459850 (-) | 393 | WP_143475630.1 | NlpC/P60 family protein | - |
| ABU981_RS15600 (ABU981_15600) | - | 3459847..3460317 (-) | 471 | WP_143475539.1 | DUF1833 family protein | - |
| ABU981_RS15605 (ABU981_15605) | - | 3460317..3460793 (-) | 477 | WP_109409994.1 | hypothetical protein | - |
| ABU981_RS15610 (ABU981_15610) | - | 3460797..3464198 (-) | 3402 | WP_353629035.1 | tape measure protein | - |
| ABU981_RS15615 (ABU981_15615) | bamE | 3464262..3464642 (-) | 381 | WP_063073753.1 | outer membrane protein assembly factor BamE | - |
| ABU981_RS15620 (ABU981_15620) | - | 3464712..3465404 (-) | 693 | WP_143475542.1 | DUF6246 family protein | - |
| ABU981_RS15625 (ABU981_15625) | - | 3465454..3466209 (-) | 756 | WP_353629034.1 | Ig-like domain-containing protein | - |
| ABU981_RS15630 (ABU981_15630) | - | 3466276..3466644 (-) | 369 | WP_049257617.1 | hypothetical protein | - |
| ABU981_RS15635 (ABU981_15635) | - | 3466641..3467009 (-) | 369 | WP_049257616.1 | hypothetical protein | - |
| ABU981_RS15640 (ABU981_15640) | - | 3467011..3467352 (-) | 342 | WP_004247766.1 | hypothetical protein | - |
| ABU981_RS15645 (ABU981_15645) | - | 3467352..3467750 (-) | 399 | WP_346836241.1 | hypothetical protein | - |
| ABU981_RS15650 (ABU981_15650) | - | 3467807..3467980 (-) | 174 | WP_004247764.1 | hypothetical protein | - |
| ABU981_RS15655 (ABU981_15655) | - | 3467990..3469084 (-) | 1095 | WP_161668582.1 | major capsid protein | - |
| ABU981_RS15660 (ABU981_15660) | - | 3469100..3469546 (-) | 447 | WP_064497284.1 | hypothetical protein | - |
| ABU981_RS15665 (ABU981_15665) | - | 3469546..3470820 (-) | 1275 | WP_210234502.1 | hypothetical protein | - |
| ABU981_RS15670 (ABU981_15670) | - | 3470824..3471753 (-) | 930 | WP_063073747.1 | phage minor head protein | - |
| ABU981_RS15675 (ABU981_15675) | - | 3471704..3473059 (-) | 1356 | WP_353629033.1 | phage portal protein | - |
| ABU981_RS15680 (ABU981_15680) | - | 3473059..3474375 (-) | 1317 | WP_159287681.1 | phage terminase large subunit | - |
| ABU981_RS15685 (ABU981_15685) | - | 3474359..3474784 (-) | 426 | WP_036905466.1 | DNA-packaging protein | - |
| ABU981_RS15690 (ABU981_15690) | - | 3474801..3474983 (-) | 183 | WP_049199098.1 | hypothetical protein | - |
| ABU981_RS15695 (ABU981_15695) | - | 3474976..3475158 (-) | 183 | WP_311747700.1 | hypothetical protein | - |
| ABU981_RS15700 (ABU981_15700) | - | 3475165..3475323 (-) | 159 | WP_165439127.1 | hypothetical protein | - |
| ABU981_RS15705 (ABU981_15705) | - | 3475320..3475736 (-) | 417 | WP_049199100.1 | hypothetical protein | - |
| ABU981_RS15710 (ABU981_15710) | - | 3475736..3476272 (-) | 537 | WP_353629032.1 | KilA-N domain-containing protein | - |
| ABU981_RS15715 (ABU981_15715) | - | 3476915..3477769 (-) | 855 | WP_115353735.1 | DUF6236 family protein | - |
| ABU981_RS15720 (ABU981_15720) | - | 3478071..3478502 (-) | 432 | WP_226888982.1 | lysis protein | - |
| ABU981_RS15725 (ABU981_15725) | - | 3478520..3478924 (-) | 405 | WP_088207137.1 | structural protein | - |
| ABU981_RS15730 (ABU981_15730) | - | 3478917..3479273 (-) | 357 | WP_223878670.1 | phage holin family protein | - |
| ABU981_RS15735 (ABU981_15735) | - | 3479705..3480208 (-) | 504 | WP_049199108.1 | antiterminator Q family protein | - |
| ABU981_RS15740 (ABU981_15740) | - | 3480205..3480396 (-) | 192 | WP_049199110.1 | hypothetical protein | - |
| ABU981_RS15745 (ABU981_15745) | - | 3480396..3481016 (-) | 621 | WP_049199112.1 | recombination protein NinG | - |
| ABU981_RS15750 (ABU981_15750) | - | 3481290..3481733 (-) | 444 | WP_049199113.1 | YbcN family protein | - |
| ABU981_RS15755 (ABU981_15755) | - | 3482069..3482326 (-) | 258 | WP_071233456.1 | DUF551 domain-containing protein | - |
| ABU981_RS15760 (ABU981_15760) | - | 3482326..3482586 (-) | 261 | WP_049199119.1 | hypothetical protein | - |
| ABU981_RS15765 (ABU981_15765) | - | 3482598..3482834 (-) | 237 | WP_049199120.1 | hypothetical protein | - |
| ABU981_RS15770 (ABU981_15770) | - | 3482850..3483017 (-) | 168 | WP_152964332.1 | hypothetical protein | - |
| ABU981_RS15775 (ABU981_15775) | - | 3483028..3483231 (-) | 204 | WP_049257592.1 | hypothetical protein | - |
| ABU981_RS15780 (ABU981_15780) | - | 3483251..3484618 (-) | 1368 | WP_152691668.1 | replicative DNA helicase | - |
| ABU981_RS15785 (ABU981_15785) | - | 3484622..3485458 (-) | 837 | WP_049257590.1 | replication protein | - |
| ABU981_RS15790 (ABU981_15790) | - | 3485714..3486061 (-) | 348 | WP_161769471.1 | hypothetical protein | - |
| ABU981_RS15795 (ABU981_15795) | - | 3486195..3486398 (-) | 204 | WP_156733177.1 | transcriptional regulator | - |
| ABU981_RS15800 (ABU981_15800) | - | 3486517..3487227 (+) | 711 | WP_156733176.1 | helix-turn-helix transcriptional regulator | - |
| ABU981_RS15805 (ABU981_15805) | - | 3487719..3487991 (+) | 273 | WP_107336920.1 | hypothetical protein | - |
| ABU981_RS15810 (ABU981_15810) | - | 3488098..3488310 (-) | 213 | WP_004247471.1 | hypothetical protein | - |
| ABU981_RS15815 (ABU981_15815) | - | 3488496..3488648 (+) | 153 | WP_004247470.1 | hypothetical protein | - |
| ABU981_RS15820 (ABU981_15820) | - | 3488645..3488830 (-) | 186 | WP_004247469.1 | hypothetical protein | - |
| ABU981_RS15825 (ABU981_15825) | - | 3488995..3489270 (+) | 276 | WP_004247467.1 | hypothetical protein | - |
| ABU981_RS15830 (ABU981_15830) | - | 3489393..3489620 (+) | 228 | WP_004247466.1 | hypothetical protein | - |
| ABU981_RS15835 (ABU981_15835) | - | 3489709..3489864 (+) | 156 | WP_162837622.1 | hypothetical protein | - |
| ABU981_RS15840 (ABU981_15840) | - | 3489929..3490126 (+) | 198 | WP_353632705.1 | hypothetical protein | - |
| ABU981_RS15845 (ABU981_15845) | - | 3490159..3490593 (+) | 435 | WP_350416899.1 | SAM-dependent methyltransferase | - |
| ABU981_RS15850 (ABU981_15850) | - | 3490593..3490745 (+) | 153 | WP_170832173.1 | hypothetical protein | - |
| ABU981_RS15855 (ABU981_15855) | - | 3490742..3491062 (+) | 321 | WP_074924238.1 | hypothetical protein | - |
| ABU981_RS15860 (ABU981_15860) | exoX | 3491064..3491741 (+) | 678 | WP_161668557.1 | exodeoxyribonuclease X | - |
| ABU981_RS15865 (ABU981_15865) | - | 3491734..3492351 (+) | 618 | WP_074924242.1 | ERF family protein | - |
| ABU981_RS15870 (ABU981_15870) | - | 3492397..3492897 (+) | 501 | WP_201741347.1 | HNH endonuclease signature motif containing protein | - |
| ABU981_RS15875 (ABU981_15875) | ssb | 3492897..3493427 (+) | 531 | WP_161668558.1 | single-stranded DNA-binding protein | Machinery gene |
| ABU981_RS15880 (ABU981_15880) | - | 3493443..3493643 (+) | 201 | WP_049197573.1 | hypothetical protein | - |
| ABU981_RS15885 (ABU981_15885) | - | 3493863..3494543 (+) | 681 | WP_036907944.1 | hypothetical protein | - |
| ABU981_RS15890 (ABU981_15890) | - | 3494608..3494904 (+) | 297 | WP_036907943.1 | hypothetical protein | - |
| ABU981_RS15895 (ABU981_15895) | - | 3494976..3495560 (+) | 585 | WP_036907942.1 | hypothetical protein | - |
| ABU981_RS15900 (ABU981_15900) | - | 3495613..3495840 (+) | 228 | WP_036907941.1 | hypothetical protein | - |
| ABU981_RS15905 (ABU981_15905) | - | 3495833..3496108 (+) | 276 | WP_036907940.1 | hypothetical protein | - |
| ABU981_RS15910 (ABU981_15910) | - | 3496266..3496442 (+) | 177 | WP_162837621.1 | hypothetical protein | - |
| ABU981_RS15915 (ABU981_15915) | - | 3496435..3496767 (+) | 333 | WP_353629030.1 | phage protein NinX family protein | - |
| ABU981_RS15920 (ABU981_15920) | - | 3496754..3497356 (+) | 603 | WP_263055554.1 | MT-A70 family methyltransferase | - |
| ABU981_RS15925 (ABU981_15925) | - | 3497569..3497760 (+) | 192 | WP_143475379.1 | AlpA family phage regulatory protein | - |
| ABU981_RS15930 (ABU981_15930) | - | 3497741..3498916 (-) | 1176 | WP_161668680.1 | site-specific integrase | - |
| ABU981_RS15935 (ABU981_15935) | sbcB | 3499094..3500524 (+) | 1431 | WP_143475377.1 | exodeoxyribonuclease I | - |
| ABU981_RS15940 (ABU981_15940) | - | 3500686..3501675 (+) | 990 | WP_110706680.1 | DUF4917 family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19505.90 Da Isoelectric Point: 6.4659
>NTDB_id=1012545 ABU981_RS15875 WP_161668558.1 3492897..3493427(+) (ssb) [Proteus mirabilis strain 10035004-2]
MASRGVCKVILIGYLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWTDQNGQDRYTTEVVVNVGGTMQMLGGNQAGSQKSQQNQGWGQPQQPQAPKQSSSNQTPQSEPPMDFDDDIP
FAPIGLPYPRHAIYVI
MASRGVCKVILIGYLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWTDQNGQDRYTTEVVVNVGGTMQMLGGNQAGSQKSQQNQGWGQPQQPQAPKQSSSNQTPQSEPPMDFDDDIP
FAPIGLPYPRHAIYVI
Nucleotide
Download Length: 531 bp
>NTDB_id=1012545 ABU981_RS15875 WP_161668558.1 3492897..3493427(+) (ssb) [Proteus mirabilis strain 10035004-2]
ATGGCAAGTCGTGGAGTATGTAAGGTGATCCTTATTGGCTACTTGGGGCAAGACCCTGAAATCCGTTATATGCCATCAGG
TGGCGCAGTAGCAAATCTCACATTGGCCACATCGGAATCGTGGCGTGATAAACAAACCGGTGAGATGAAAGAAAAAACCG
AGTGGCATCGGGTATGCATCTTCGGCAAATTAGCCGAAATTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATATATC
GAAGGTTCTCTGCAAACCAGAAAATGGACAGACCAGAACGGACAAGACCGATACACAACGGAAGTGGTAGTTAATGTCGG
TGGAACAATGCAGATGCTAGGTGGTAATCAGGCAGGAAGCCAGAAGTCACAGCAGAATCAAGGATGGGGACAGCCACAGC
AACCGCAAGCACCAAAACAATCATCGAGTAATCAAACACCACAAAGTGAACCTCCGATGGATTTCGATGACGACATCCCA
TTTGCCCCTATCGGACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA
ATGGCAAGTCGTGGAGTATGTAAGGTGATCCTTATTGGCTACTTGGGGCAAGACCCTGAAATCCGTTATATGCCATCAGG
TGGCGCAGTAGCAAATCTCACATTGGCCACATCGGAATCGTGGCGTGATAAACAAACCGGTGAGATGAAAGAAAAAACCG
AGTGGCATCGGGTATGCATCTTCGGCAAATTAGCCGAAATTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATATATC
GAAGGTTCTCTGCAAACCAGAAAATGGACAGACCAGAACGGACAAGACCGATACACAACGGAAGTGGTAGTTAATGTCGG
TGGAACAATGCAGATGCTAGGTGGTAATCAGGCAGGAAGCCAGAAGTCACAGCAGAATCAAGGATGGGGACAGCCACAGC
AACCGCAAGCACCAAAACAATCATCGAGTAATCAAACACCACAAAGTGAACCTCCGATGGATTTCGATGACGACATCCCA
TTTGCCCCTATCGGACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.797 |
100 |
0.682 |
| ssb | Glaesserella parasuis strain SC1401 |
50.526 |
100 |
0.545 |
| ssb | Neisseria gonorrhoeae MS11 |
43.182 |
100 |
0.432 |
| ssb | Neisseria meningitidis MC58 |
43.182 |
100 |
0.432 |