Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPOKI128_RS07960 Genome accession   NZ_CP006822
Coordinates   387376..388386 (-) Length   336 a.a.
NCBI ID   WP_000664516.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382376..393386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS01910 (HPOKI128_01995) - 382481..382855 (-) 375 WP_000772153.1 chemotaxis response regulator CheY -
  HPOKI128_RS01915 (HPOKI128_02000) - 383145..383747 (+) 603 WP_025287952.1 outer membrane protein -
  HPOKI128_RS01925 (HPOKI128_02010) - 383879..384286 (-) 408 WP_025287953.1 hypothetical protein -
  HPOKI128_RS01930 (HPOKI128_02015) - 384289..384519 (-) 231 WP_000944389.1 PP0621 family protein -
  HPOKI128_RS01935 (HPOKI128_02020) rsmG 384513..385049 (-) 537 WP_025287954.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPOKI128_RS01940 (HPOKI128_02025) queA 385046..386083 (-) 1038 WP_025287955.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPOKI128_RS01945 (HPOKI128_02030) tatC 386084..386833 (-) 750 WP_025287956.1 twin-arginine translocase subunit TatC -
  HPOKI128_RS01950 (HPOKI128_02035) tatB 386826..387308 (-) 483 WP_025287957.1 Sec-independent protein translocase protein TatB -
  HPOKI128_RS07960 (HPOKI128_02040) ruvB 387376..388386 (-) 1011 WP_000664516.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPOKI128_RS07965 (HPOKI128_02045) panB 388387..389199 (-) 813 WP_025287958.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HPOKI128_RS01965 (HPOKI128_02050) - 389349..390071 (+) 723 WP_001871798.1 hypothetical protein -
  HPOKI128_RS01970 (HPOKI128_02055) - 390061..390915 (+) 855 WP_025287959.1 outer membrane beta-barrel protein -
  HPOKI128_RS01975 (HPOKI128_02060) - 390924..391868 (+) 945 WP_038416411.1 outer membrane protein -
  HPOKI128_RS01980 (HPOKI128_02065) - 391878..393200 (+) 1323 WP_025287961.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37307.27 Da        Isoelectric Point: 6.0715

>NTDB_id=101248 HPOKI128_RS07960 WP_000664516.1 387376..388386(-) (ruvB) [Helicobacter pylori oki128]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=101248 HPOKI128_RS07960 WP_000664516.1 387376..388386(-) (ruvB) [Helicobacter pylori oki128]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGGCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCAGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGTTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCCGCTGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTAGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.87

96.131

0.518
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482