Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPOKI128_RS04105 Genome accession   NZ_CP006822
Coordinates   846847..847398 (-) Length   183 a.a.
NCBI ID   WP_000635144.1    Uniprot ID   -
Organism   Helicobacter pylori oki128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841847..852398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI128_RS08535 - 842729..842924 (-) 196 Protein_804 hypothetical protein -
  HPOKI128_RS04100 (HPOKI128_04220) - 842884..846591 (-) 3708 WP_025288264.1 DUF3519 domain-containing protein -
  HPOKI128_RS04105 (HPOKI128_04225) ruvA 846847..847398 (-) 552 WP_000635144.1 Holliday junction branch migration protein RuvA Machinery gene
  HPOKI128_RS04110 (HPOKI128_04230) - 847423..849267 (-) 1845 WP_025288265.1 FapA family protein -
  HPOKI128_RS04115 (HPOKI128_04235) murJ 849360..850820 (+) 1461 WP_025222951.1 murein biosynthesis integral membrane protein MurJ -
  HPOKI128_RS04120 (HPOKI128_04240) cysS 850821..852218 (+) 1398 WP_025288266.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20148.73 Da        Isoelectric Point: 9.4311

>NTDB_id=101231 HPOKI128_RS04105 WP_000635144.1 846847..847398(-) (ruvA) [Helicobacter pylori oki128]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=101231 HPOKI128_RS04105 WP_000635144.1 846847..847398(-) (ruvA) [Helicobacter pylori oki128]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCGCATATAGAAGTGCAGGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

94.536

100

0.945
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361

Multiple sequence alignment